Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B23
         (171 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    27   2.4  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    27   2.4  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    26   4.1  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    25   9.5  

>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 153 SPTIDPSTWTLPSG 112
           SPT+DP +W +P G
Sbjct: 211 SPTLDPKSWIVPKG 224


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 153 SPTIDPSTWTLPSG 112
           SPT+DP +W +P G
Sbjct: 211 SPTLDPKSWIVPKG 224


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 153 SPTIDPSTWTLP 118
           SPTI PSTW +P
Sbjct: 207 SPTIHPSTWIIP 218


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 153 SPTIDPSTWTLP 118
           SPTI PSTW +P
Sbjct: 207 SPTIHPSTWIIP 218


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 86  RGNITFTRLPDGKVHVEGSIV 148
           RG ITF  L  GK+H E S +
Sbjct: 506 RGGITFEHLCQGKMHEETSSI 526


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
           protein 5 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 45  SRHGLSPIWSGRTSEAILRSLGC 113
           SR+G SP W  R  E   RS  C
Sbjct: 78  SRNGCSPPWMDRNFETSTRSSPC 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,804,193
Number of Sequences: 27780
Number of extensions: 58652
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)