Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B22
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 39 2e-04
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 39 2e-04
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 2.4
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 24 5.6
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 24 5.6
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 23 7.5
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 23 9.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 9.9
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 9.9
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 23 9.9
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 38.7 bits (86), Expect = 2e-04
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 2 RARAHSIQIIKV-EVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPS 169
RAR SI+I+KV EV K RR VKQ + FPLP R V FA RPS
Sbjct: 114 RARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPS 173
Query: 170 TYF 178
T++
Sbjct: 174 TFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 38.7 bits (86), Expect = 2e-04
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 2 RARAHSIQIIKV-EVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPS 169
RAR SI+I+KV EV K RR VKQ + FPLP R V FA RPS
Sbjct: 114 RARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPS 173
Query: 170 TYF 178
T++
Sbjct: 174 TFY 176
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 81 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 173
NS+P +S+S+Y NA N SI T +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 35 VEVIKAAACRRPQVKQFHTSKIG 103
VE+ AA C++ + HT ++G
Sbjct: 315 VEIWDAATCKKTRTMSGHTERVG 337
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 59 CRRPQVKQFHTSKIGFPLPKRVHQYK 136
C VK I FP+P + H+YK
Sbjct: 262 CYVKPVKNLRRLDIVFPIPGQYHKYK 287
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 23.4 bits (48), Expect = 7.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 199 IPYIK-LH--KVRARPLVCKGIETLVLVNAFW*RETDL 95
+P IK LH R PL+ + +VLV W +E DL
Sbjct: 213 LPDIKNLHYWTTRLSPLINSNTDAIVLVANRWGKENDL 250
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 211 FIVIIPYIKLHKVRARPLVCKG 146
F+ I+P I++ + A+PL C G
Sbjct: 380 FMWILPQIQIIVILAQPLHCSG 401
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 56 ACRRPQVKQFHTSKIGFPLPKRVHQYKRLNT 148
ACR+ ++F S G K+ Q+K++ T
Sbjct: 100 ACRKLSTERFFYSPNGIDEMKKQQQFKKIPT 130
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 116 KRVHQYKRLNTFAYKRPS 169
K+ +Y L+TF+YKR S
Sbjct: 831 KKAAEYSLLHTFSYKRLS 848
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -2
Query: 109 RETDLA-GVELLNLWSTTCRCLDYFHFDD 26
RE D A + LW T C CL ++ D
Sbjct: 352 REGDSAKNIPTHKLWCTYCLCLAHYKLGD 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,240
Number of Sequences: 5004
Number of extensions: 17825
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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