Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B22
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 40 3e-04
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 40 5e-04
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 39 9e-04
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 1.6
11_06_0007 - 19171122-19172036 27 2.1
11_01_0445 - 3455449-3456096,3456348-3457958 27 2.8
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 26 4.9
09_02_0462 + 9583558-9584910 26 6.5
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 25 8.6
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 25 8.6
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 25 8.6
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 25 8.6
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 RARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPST 172
R R IQIIK + C+R KQFH S I FPL R K TF RP+
Sbjct: 117 RVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNL 176
Query: 173 Y 175
+
Sbjct: 177 F 177
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 RARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPST 172
R R IQIIK + C+R KQFH S I FPL R K TF RP+
Sbjct: 117 RVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNL 176
Query: 173 Y 175
+
Sbjct: 177 F 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 38.7 bits (86), Expect = 9e-04
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 RARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPST 172
R R IQIIK + C+R KQFH I FPL R K TF RP+
Sbjct: 134 RVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFKASRPNL 193
Query: 173 Y 175
+
Sbjct: 194 F 194
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 129 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 1
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 87 WNCLTCGRRHAAALITSTLMICI 19
W C CG R AA L+ +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 74 VKQFHTSKIGFPLPKRVHQYKRLNTFAYK 160
V+ F SKIG P R+ QY L YK
Sbjct: 447 VRSFFESKIGEPWHGRIDQYDFLQQITYK 475
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 190 IKLHKVRARPLVCKGIETLVLVNAFW 113
+++ V +PLVCKG E V+ + W
Sbjct: 254 LEIADVEGKPLVCKGCEVEVIGSTPW 279
>09_02_0462 + 9583558-9584910
Length = 450
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 81 CLTCGRRHAAALITSTLMICIECA 10
C CG LI+ T MI ++CA
Sbjct: 101 CYGCGNPETEVLISKTQMITLKCA 124
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 114 GSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 1
G G+P W RH L+T++L + + C AL
Sbjct: 26 GRGRPEEEGWPPSLAENRHLIVLLTTSLAVLVGCGVAL 63
>09_04_0695 - 19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 223 YEMDFIVIIPYIKLHKVRARPLVCKGIETLVLVNAFW 113
++ + +V++P KL P+ CK LVL N W
Sbjct: 1071 FQFNGMVLLPSTKLSWEAWAPVKCKIFSWLVLQNRVW 1107
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 59 CRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYFM*FYVWND 202
C+RP K+ S++ FP+ QY++ F P Y+ +V N+
Sbjct: 441 CKRPYFKERVCSQLNFPMQISCLQYEKQGKF----PKDYWWCHFVNNN 484
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 95 KIGFPLPKRVHQYKRLNTFAYKRPST 172
K+G L K +HQ +LN A+ +P T
Sbjct: 1173 KMGMQLHKCIHQLPKLNLSAHVQPIT 1198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,629,951
Number of Sequences: 37544
Number of extensions: 119502
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -