Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B22
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    58   1e-09
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    23   5.4  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +2

Query: 2   RARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYF 178
           RA+A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + K L+ F   R +T+F
Sbjct: 121 RAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 23.0 bits (47), Expect(2) = 5.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 105 KPILLVWNCLTCGRRHAAALITSTLMICIECA 10
           +P  +++N   C   + A +    LMIC  CA
Sbjct: 95  QPCKIMFNEYECYPFYTANIFIRLLMICTNCA 126



 Score = 21.4 bits (43), Expect(2) = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 195 HT*NYIKYVLGLLYAKVLRRLYW*TRFGSGKPILLV 88
           +T N I  +   L   VLR+LY  + F +   +LLV
Sbjct: 30  YTNNIIAIITWTLTVVVLRKLYTKSIFPNSTLVLLV 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,720,173
Number of Sequences: 27780
Number of extensions: 102435
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)