Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B20
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    28   1.2  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.2  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.0  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    26   5.0  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 264 DIFRTLMQRLGHKKFYIQGGDWGAAIASGMATLF 365
           D+  T++Q L  ++   Q   WG  +A G+A LF
Sbjct: 532 DVASTILQTLMEREESAQNDQWGRFMALGLALLF 565


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 108 PGSVREFYEAIPLLTRQTPGYDFVFEVVVPSLPGY--GFSDAAVRPGLSIPHV 260
           P  +   Y  +P+  R+      VF  ++PSLPG+   F +     GL+I  V
Sbjct: 270 PNVLLSLYRILPIDIRRIMSKLIVFNGILPSLPGWYQRFQNEMTSRGLAIKAV 322


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 384 HHSNAAITQHPCAMTKTMVGAFIPSLI--VESHLADRMYPLSSFF-AYLLEEFGYFHLQA 554
           HH+ +    + CAM K  +GA   + +  +++ L   +YP         +E  GY  L A
Sbjct: 705 HHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPA 764

Query: 555 TKPDTIGI 578
            +  T+ I
Sbjct: 765 GQNATVAI 772


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 224 IRKSISR*TRYNNFKNEIISRRLPSQQRYSFVK 126
           I KSI++ T Y N++ E +S   PS    S  K
Sbjct: 270 ILKSITKQTYYENYRTEKLSNDSPSNTSLSLQK 302


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 552 LEDGNIRTLLKDRRKTMIADTFD 484
           LEDGN+  L  D+RK  +A   D
Sbjct: 819 LEDGNLNVLEGDKRKAFLATVED 841


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 REFYEAIPLLTRQTPGYDF 176
           R F E + + TRQ  GYDF
Sbjct: 435 RVFLEQVMIYTRQNAGYDF 453


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 81  VPLLLMHGWPGSVREFYEAIPLLTRQTPGYDFVFEVVVPSL 203
           VP + +  WP  +      +  L  +  GYD +  +V  SL
Sbjct: 142 VPYVTIRAWPALLSSLVPPVVFLIMKESGYDLLACIVSSSL 182


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 376 ISSGNRVAIPDAIAAPQS 323
           ++SG R A+PD +A+P S
Sbjct: 816 VTSGGRPALPDEMASPSS 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,026
Number of Sequences: 5004
Number of extensions: 58382
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)