Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B20
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 46 2e-05
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 46 2e-05
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059 43 2e-04
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 38 0.005
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 37 0.015
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 34 0.078
06_03_0290 - 19193707-19193752,19193822-19194090 31 0.73
12_02_0504 - 19771191-19772134,19772210-19774892 29 3.0
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 29 3.0
07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090 28 5.2
06_03_1385 - 29799166-29799522 28 5.2
05_01_0530 - 4567481-4569043 28 5.2
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 28 6.8
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 6.8
01_01_0820 - 6395150-6395769,6395865-6396294 28 6.8
07_01_0044 - 348439-349539,351979-352301,352418-352550 27 9.0
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 180 FEVVVPSLPGYGFSDAAV-RPGLSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMA 356
F V P L GYG SDA R ++ H+ L+ LG + ++ G DWGA +A +
Sbjct: 57 FRAVAPDLRGYGDSDAPQGRDSYTVLHLVGDLVALIADLGRPQVFVAGHDWGAVVAWQLC 116
Query: 357 TLFPDDILGHHS 392
L D + H S
Sbjct: 117 LLRADLVTAHVS 128
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 180 FEVVVPSLPGYGFSDAAV-RPGLSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMA 356
F V P L GYG SDA R ++ H+ L+ +G + ++ DWGAA+A +
Sbjct: 57 FRAVAPDLRGYGDSDAPPGRDSYTVLHLVGDLVALIADVGQPRVFVAAHDWGAAVAWQLC 116
Query: 357 TLFPDDILGHHSNAAITQHPCAMTKTMV 440
L PD + + ++ HP T++ V
Sbjct: 117 LLRPDLVTAFVA-LSVEYHPRNPTRSPV 143
>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
Length = 338
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FEVVVPSLPGYGFSDAAVR-PGLSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMA 356
F + P L GYG +DA S HV L+ LG K ++ G DWGA IA M
Sbjct: 63 FRCLAPDLRGYGDTDAPPEIESYSAFHVVGDLVALLDALGLAKVFVVGHDWGAIIAWYMC 122
Query: 357 TLFPDDI 377
PD +
Sbjct: 123 LFRPDRV 129
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +3
Query: 54 PQVPSGVQIVPLLLMHGWPGSVREFYEAI-PLLTRQTPGYDFVFEVVVPSLPGYGFSDAA 230
P SGV+ ++ +HG+ S + E + P + G +F V L G+G S
Sbjct: 185 PTTASGVETEDVVFVHGFISSSVFWTETVFPAFSEAAKGRYRMFAV---DLLGFGRSPKP 241
Query: 231 VRPGLSI-PHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMATLFPDDI 377
++ HV I R+++QR +KF++ G+ +A +A +PD +
Sbjct: 242 ADSLYTLREHVEMIERSVLQRYRLRKFHVVAHSLGSVLALALAVKYPDAV 291
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 36.7 bits (81), Expect = 0.015
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +3
Query: 84 PLLLMHGWPGSVREFYEAIPLLTRQTPGYDFVFEVVVPSLPGYGFSDA-AVRPGLSIPH- 257
P+LL+HG+P + + L D + V P L GYG SDA A + H
Sbjct: 36 PVLLLHGFPQVWYAWRHQMRALA------DAGYRAVAPDLRGYGDSDAPAAELQYTAMHV 89
Query: 258 VADIFRTLMQRLG-HKKFYIQGGDWGAAIASGMATLFPDDI 377
V D+ L +G K ++ DWGA A + PD +
Sbjct: 90 VGDLVALLDAVVGAGKPVFVVAHDWGALTAWNLCLFRPDRV 130
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 34.3 bits (75), Expect = 0.078
Identities = 38/146 (26%), Positives = 58/146 (39%)
Frame = +3
Query: 60 VPSGVQIVPLLLMHGWPGSVREFYEAIPLLTRQTPGYDFVFEVVVPSLPGYGFSDAAVRP 239
VP+ PLLL+HG+ G+ + A L GYD +VP L +G S +
Sbjct: 60 VPANPPRNPLLLLHGF-GASATWQWAPYLRPLIAAGYD----PIVPDLLFFGASYTRL-A 113
Query: 240 GLSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMATLFPDDILGHHSNAAITQHPC 419
S A + M +G +F + G +G + MA ++PD + + C
Sbjct: 114 DRSEAFQARSIKAAMDAIGVARFGLVGVSYGGFVGYRMAAMYPDAV---ERVVLVCAGVC 170
Query: 420 AMTKTMVGAFIPSLIVESHLADRMYP 497
K + G P V AD + P
Sbjct: 171 LEEKDLAGGLFPVAGV-GEAADLLVP 195
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 253 GIERPGR-TAASENPYPGRLGTTTSKTKSYPGVCRVSSGIAS*NSLTEPGQPCIRSRGT 80
GIE GR + +P PG + +PG C V G +S +S P R+ G+
Sbjct: 12 GIEAAGRGRRVAASPSPGGTPAASRGLPGWPGFCGVGCGSSSSSSFAPPRMQARRAAGS 70
>12_02_0504 - 19771191-19772134,19772210-19774892
Length = 1208
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 472 VTLQIECIRYHRFSPIF*KSSDISIFKLLNLIQLE 576
V+L++EC + P F K S + KL +L+QLE
Sbjct: 795 VSLELECCMKWKSMPSFQKLSSLKYLKLEHLLQLE 829
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 365 E*SGHSGCNSRAPVSSLYVKLLMSKPLH*RPEDICYV 255
E GHSG S S+Y ++ ++ L R E +CYV
Sbjct: 349 EQGGHSGNRSEVSNRSIYARMDVNLTLQIRLEKVCYV 385
>07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090
Length = 530
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +3
Query: 135 AIPLLTRQTPGYDFVFEVVVPSLPGYGFSDAAVRPGLSIPHVADIFRTLMQ-----RLGH 299
AIPL +Q G + + GF+D A I + ++F T + RLG
Sbjct: 291 AIPLF-QQLTGINVIMFYAPVLFKTLGFADDASLMSAVITGLVNVFATFVSIVTVDRLGR 349
Query: 300 KKFYIQGG 323
+K ++QGG
Sbjct: 350 RKLFLQGG 357
>06_03_1385 - 29799166-29799522
Length = 118
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 243 LSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAIASGMATLFPDDILGHHSN 395
++IP D FR + + H+K + GG GA A L GHH+N
Sbjct: 60 ITIPCGVDHFRRVQGIIHHQKHH-HGGSHGAGGAGAGGLLSGHGSSGHHNN 109
>05_01_0530 - 4567481-4569043
Length = 520
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +3
Query: 102 GWPGSVREFYEAIPLLTRQTPGYDFVFEVVVPSLPGYGFSDAAVRPGLSIP--HVADIFR 275
GW +V +PLLT G F+ E + + G A VR G+ +P HV +
Sbjct: 371 GWNSTVESLSHGVPLLTWPHFGDQFLNECLAVDVLG-----AGVRAGVKVPVTHVDAVNS 425
Query: 276 TLMQRLGHKKFYIQG--GDWGAAIA 344
+ R G ++ GD AA A
Sbjct: 426 PVQVRSGEVASAVEELMGDGAAAAA 450
>06_01_0605 +
4373697-4373872,4374840-4374876,4375296-4375399,
4375942-4376137,4376385-4376451,4376895-4376998,
4377090-4377174,4377309-4377369,4377694-4377825,
4377924-4377993,4379261-4379413,4379583-4379694,
4379779-4379920,4380023-4380140,4380862-4380957,
4381061-4381189
Length = 593
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 387 DDPKYHQGIEWPFRMQ*PRPSLLLVC 310
+DP +EWPF+ + RP L +C
Sbjct: 18 EDPLDADALEWPFQYEEARPLLAWIC 43
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 48 VRPQVPSGVQIVPLLLMHGWPGSVREFYEAIPLLTRQTPGYDFVFEVVVPS 200
+R S I+ LL+M WPG + EAI L T Q+ F +++ S
Sbjct: 582 MRTSSRSNSSILVLLIMWSWPGRTIRYREAI-LSTAQSSTPTIAFHLLILS 631
>01_01_0820 - 6395150-6395769,6395865-6396294
Length = 349
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/85 (21%), Positives = 26/85 (30%)
Frame = +3
Query: 162 PGYDFVFEVVVPSLPGYGFSDAAVRPGLSIPHVADIFRTLMQRLGHKKFYIQGGDWGAAI 341
P + F V P G G AA P + H + KK+++ WG
Sbjct: 262 PAFQFYGSGVFPGPCGSGSGAAAAAPTTN--HAVTLVGYCQDGASGKKYWVAKNSWGKTW 319
Query: 342 ASGMATLFPDDILGHHSNAAITQHP 416
L D+ H + P
Sbjct: 320 GEKGYILLEKDVASPHGTCGVAVSP 344
>07_01_0044 - 348439-349539,351979-352301,352418-352550
Length = 518
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Frame = +3
Query: 90 LLMHGWPGSVREFYEA-------IPLLTRQTPGYDFVFEVVVPSLPGYGFSDAAVRPGLS 248
L+ H W +R Y A IP +Q G + + GF A
Sbjct: 268 LVQHPWRNILRRKYRAQLTMAICIPFF-QQLTGINVIMFYAPVLFDTLGFKSDASLMSAV 326
Query: 249 IPHVADIFRTLMQ-----RLGHKKFYIQGG 323
I + ++F TL+ RLG +K ++QGG
Sbjct: 327 ITGLVNVFATLVSIFTVDRLGRRKLFLQGG 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,477
Number of Sequences: 37544
Number of extensions: 382041
Number of successful extensions: 890
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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