Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B19
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.6  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   6.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   8.5  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   8.5  

>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 375 FEPATALLSCEEAVVEVRDYVTS-GESPAAVVTAEKEHVMAG 497
           F   TALL  E  V+E  D++ S  ES  AVV +E +  + G
Sbjct: 161 FSLLTALLDSEADVIEFGDFLISILESDGAVVNSEDDEGVVG 202


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 550 YPGSASMIPGRPSTQTCTPAITCSFSAVTTAAGLS 446
           + GSA+++    +T TC   ++ + S+ T A  L+
Sbjct: 441 FSGSATLVSASSATGTCASYLSAAGSSATNAISLT 475


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 189 NYDSVSNFISLYDAFDRRTTTVALADLYQHYE 284
           N+D +     LYD F  + T   +A++  H E
Sbjct: 626 NHDVIITLSELYDGFPLKGTFTNVAEIISHLE 657


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 LADLYQHYEPPIRSKKHTCVG 320
           + DLY HY+P      HTC+G
Sbjct: 225 ILDLYMHYQP------HTCIG 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,493
Number of Sequences: 5004
Number of extensions: 28776
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)