Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B19
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0116 + 4420808-4421323,4421367-4421918 31 0.93
06_03_0713 + 23811483-23811846,23811964-23812019 31 0.93
05_04_0311 - 20120172-20122115 30 1.2
09_06_0049 + 20486178-20486358,20486545-20486717,20487608-204876... 29 2.8
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 29 2.8
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 29 2.8
11_01_0233 + 1801011-1802081 29 3.8
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279... 28 5.0
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 28 6.6
01_06_0248 + 27862048-27864310,27864331-27864776 28 6.6
08_02_1044 + 23913849-23915090 27 8.7
06_01_0876 - 6712224-6712812,6713777-6715233 27 8.7
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 27 8.7
01_02_0075 + 10873789-10873871,10873883-10874420 27 8.7
01_01_0743 - 5763654-5766902 27 8.7
>09_02_0116 + 4420808-4421323,4421367-4421918
Length = 355
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +3
Query: 63 HLPALPPARWGPPRNALPLTLHQHEELATRAEVILRRLLVTDNYDSVSNFISLY 224
H PA P R PPR LT+ + L T A RRL + D +S+F+ LY
Sbjct: 37 HHPAPVPPRGCPPRPHTLLTVPAFQPLITAASSSPRRLSL-DFVPDLSHFVLLY 89
>06_03_0713 + 23811483-23811846,23811964-23812019
Length = 139
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 187 SVTSNRRRMTSARVASSSCWCS--VRGSAFRGGPHRAGGSA 71
+ +++ + S RVAS SC CS +FR HR GG A
Sbjct: 59 AAAQSKQLLGSPRVASPSCLCSPTTHAGSFRCRLHRGGGGA 99
>05_04_0311 - 20120172-20122115
Length = 647
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 385 AGSKPGKLFSKDRQRLISSSPRPTHVCFLDLMGGS*CW 272
+ + K+ R +L++ THV LD++G S CW
Sbjct: 306 SAGRGSKILVTTRMKLVARYLNSTHVVSLDVLGSSDCW 343
>09_06_0049 +
20486178-20486358,20486545-20486717,20487608-20487683,
20489377-20489465
Length = 172
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 324 GLELIKRWRSLEKSFPGFEPATALLSCEEAVVE 422
GLEL+ R +EK P EPATA EE +E
Sbjct: 116 GLELLVDSRLVEKKSPNNEPATASYRKEEMNIE 148
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 267 LYQHYEPPIRSKKHTCVGLGLEL-IKRWRSLEKSFPG-FEPATALLSCEEAVVEVRDY 434
+Y + +S+ CV + L +K+W+ +EK+FPG LL + + + DY
Sbjct: 75 VYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADY 132
>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
Length = 147
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 399 SCEEAVVEVRDYVTSGESPAAVVTAEKEHVMAGVQVCVDGRPGIMLADPGYH 554
SC+ RDY +P + +V GV +D RPG + GYH
Sbjct: 14 SCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYCNCGYH 65
>11_01_0233 + 1801011-1802081
Length = 356
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 63 HLPALPPARWGPPRNALPLTLHQH 134
+LPA PPA PR PL LH H
Sbjct: 73 YLPAEPPAAAPRPRRRRPLLLHLH 96
>07_03_1477 +
26826661-26827019,26827218-26827338,26827813-26827962,
26828075-26828311
Length = 288
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 339 KRWRSLEKSFPGFEPATALLSCEEAVVEVRDYVTS 443
++WR + F GF P L +A++++RD ++S
Sbjct: 247 RKWRLKKLQFAGFRPLKQQLVFLKAIMDLRDNISS 281
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +3
Query: 264 DLYQHYEPPIRSKKHTCVGLGLELIKRWRSLEKSFPGFEPATALLSCEEAVVEVRDYVTS 443
DL +E + K + V L ++ W ++ FP + + ++ C E V R V
Sbjct: 271 DLVSAFEGYLNEKSYLIVLTDLSSLEEWNKIKICFPSNDRGSRIILCTEHVEVARLCVPQ 330
Query: 444 GESP 455
P
Sbjct: 331 DSVP 334
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -1
Query: 160 TSARVASSSCWCSVRGSAFRGGPH-----RAGGSAGRWV 59
+++RV + S W V G+A R PH RA G RW+
Sbjct: 799 SASRVNAISPWFYVGGTAIRAAPHAYDGLRARGYVQRWI 837
>08_02_1044 + 23913849-23915090
Length = 413
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -1
Query: 172 RRRMTSARVASSSCWCSVRGSAFRGGPHRAG-----GSAGRWVSRVS 47
R +TSAR+ ++ S R +A GG RAG G +GRW S VS
Sbjct: 308 REIVTSARLRRTTSLQSFRTTAAAGGGARAGRSVRLGQSGRW-SNVS 353
>06_01_0876 - 6712224-6712812,6713777-6715233
Length = 681
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 287 AHKIQEAHVRRPRTRADQALAIFREK 364
A+++ +AHVRR R DQ + + EK
Sbjct: 621 AYEVAKAHVRRNRAAIDQLVDVLMEK 646
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 294 RSKKHTCVGLGLEL-IKRWRSLEKSFPG-FEPATALLSCEEAVVEVRDY 434
+S+ CV + L +K+W+ +EK+FPG LL + + + DY
Sbjct: 126 KSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPKISMADY 174
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 118 RGSAFRGGPHRAGGSAGRWVSRVSWASQLGHSAPQRPT 5
RG+ G GGS W + V W + G + +RPT
Sbjct: 83 RGAGSDGWRCGGGGSRRIWQAAVGWRRRRGPAVERRPT 120
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 60 THLPALPPARWGPPRNALPLTLHQHEELATRAEVI 164
+HL A PP W PP+N+ P T + + LA ++
Sbjct: 11 SHLRAPPP--WPPPKNSSPRTRVRCDVLAASGHIL 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,273
Number of Sequences: 37544
Number of extensions: 275299
Number of successful extensions: 1146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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