Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B16
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   3.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   3.5  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.6  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   4.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.6  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   6.0  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   6.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.0  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   8.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   8.0  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.0  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 415 LMVITKNIWNFLKVNTVNYSNMLTRSVF 498
           +M  T  I N  KVN VN  N+L+  VF
Sbjct: 170 MMQATTQIQNLYKVNNVNPLNLLSAPVF 197


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 IAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDN 395
           + + +I   KD G   V   KT +++   K+YLER  DN
Sbjct: 690 LVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE-DN 727


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 165 VVVLNMLEVKITEDVKVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKD 311
           V+ L +L++ +TE V VG +   +++A+   N    IGI+ +     KD
Sbjct: 99  VIRLGILKINLTEYVYVGQDTRKYLLADSKINATIRIGISLKQTSGNKD 147


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 469  YSNMLTRSVFYLLPLLWTWYLSIF 540
            Y N+L + +FYLL  LW   L  F
Sbjct: 999  YVNLLPKPLFYLLSRLWFGLLETF 1022


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 309 DAGASCVKFQKTCLKEKFTKKYLERSYDNHNS 404
           D    C K+ + C+  +F +K     Y+N NS
Sbjct: 28  DVCFECQKYNENCVYRQFYRKIKRLKYNNDNS 59


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 327 VKFQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFS-ESQYREL 470
           +  Q   L  KF K  +  SYD  N WG+   + +  L F   S+ R+L
Sbjct: 748 IDLQLPVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKDRKL 796


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 271 SP*WFCPTSAIIKHGLLPPTFTSSVI 194
           SP + CP  A++  G L P+  SSVI
Sbjct: 124 SPIYVCPNLAVMSIGFLLPSEDSSVI 149


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 336 QKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSESQYRELFKYA 482
           +K C  E +TK++L  S +  N+  K     KKHL+  E Q  +L +YA
Sbjct: 371 EKVC--ESWTKQFLG-SLEKQNNEVK-----KKHLQLLEKQISKLMRYA 411


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 298 FISCFAIPISP*WFCPT 248
           FI CF +PIS  WF  T
Sbjct: 420 FIGCFLLPISMFWFAWT 436


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 327  VKFQKTCLKEKFTKKYLER 383
            V FQ   LK+K+T++YLE+
Sbjct: 1127 VSFQFDLLKKKYTQEYLEK 1145


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
 Frame = +3

Query: 75  NLLLRSDSLFPSDPA*TGTRFSFVCFYGTLVVVLNM-LEVKITEDVKVGGNNPCFIIAEV 251
           +LL  + +L P     +GTR S    Y    +  N+  E K     K+G  + CF+    
Sbjct: 437 DLLNANYTLLPLTTDKSGTRPSTTLQYELHKIGSNIKAEFKTMPIGKIGYQSTCFVRCST 496

Query: 252 GQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLE 380
           GQ    D+         A D  +  V F+   L   FTK  L+
Sbjct: 497 GQKTFSDLKTVLPTATLAADYISMIVLFR---LMANFTKISLQ 536


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 423 HHKFYPKNCDYHKSALNTF 367
           H + YPKNC + +S L  F
Sbjct: 235 HLREYPKNCAFSRSVLEIF 253


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 145 TNENRVPVQAGSLGNKLSLRNNRFIDLP 62
           +N + + V + SL ++LSLRNN  I +P
Sbjct: 52  SNNSNLAVTSRSLRHRLSLRNNTPIFMP 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,658
Number of Sequences: 5004
Number of extensions: 64163
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)