Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B16
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     30   1.6  
05_01_0187 + 1349725-1352238                                           30   1.6  
10_08_0808 + 20722479-20722585,20722674-20722959                       30   2.1  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    30   2.1  
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572...    29   3.6  
01_01_1125 - 8920590-8924372                                           29   4.8  
11_01_0763 + 6402901-6403971,6404581-6404826                           28   6.3  

>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 171 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 64
           P R F K  +      +++ RL +N HY   GLST+
Sbjct: 538 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 573


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 171 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 64
           P R F K  +      +++ RL +N HY   GLST+
Sbjct: 501 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 536


>10_08_0808 + 20722479-20722585,20722674-20722959
          Length = 130

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 182 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR 268
           AR   +GGR  WR++ V + R +W + +R
Sbjct: 95  ARGAADGGRPDWRERRVRWRRSAWRREAR 123


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -3

Query: 334 NLTQLAPASLAAFISCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTSVP 155
           N+TQ  P S  +F+S +A+  SP    PT       L PP+ TSS + +S   +   SVP
Sbjct: 824 NVTQRTPIS--SFLSGYAVQSSPGLTTPTKFTSLRPL-PPSVTSSHVYSSEDAQPHGSVP 880


>07_01_0747 -
           5724586-5724648,5725229-5725309,5725564-5725656,
           5725775-5725929,5726023-5726131,5726291-5726481,
           5727463-5727614,5728453-5728728,5729415-5729587,
           5730023-5730298,5730839-5730958,5731051-5731176,
           5731629-5731970
          Length = 718

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 QAIQPERGPGFRLFVFMERSLW 171
           QA+ PER PGF L V    SLW
Sbjct: 559 QAVFPERTPGFVLDVLARSSLW 580


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 489  IGILFTASAMDMVSFDFLVXLKVPFIKIGSGDSNNLLFLKYAASKKLPLIISTGMVDKSA 668
            +G+LF+A     +     +  +V  + + S DSNN   L +  + + P+     M +   
Sbjct: 1115 VGLLFSACEQGRIDEVVTILNEVALMSVSSSDSNNCSTLSHLKNVETPVAYDRNMDNPGQ 1174

Query: 669  V--KTIYDIISS 698
            V   T Y + S+
Sbjct: 1175 VLCSTTYGVSSN 1186


>11_01_0763 + 6402901-6403971,6404581-6404826
          Length = 438

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR*YW 277
           AR   +GGR  WR++ V + R +W +    +W
Sbjct: 242 ARGAADGGRPDWRERRVRWRRPAWRERRGRWW 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,370
Number of Sequences: 37544
Number of extensions: 379569
Number of successful extensions: 839
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)