Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B16
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    31   0.61 
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    31   0.61 
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z47357-11|CAA87428.3|  303|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z30662-12|CAA83142.3|  303|Caenorhabditis elegans Hypothetical p...    29   4.3  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    28   5.7  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    28   5.7  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    28   5.7  
U15304-1|AAA50369.1|  407|Caenorhabditis elegans PES-10 protein.       27   9.9  
AL110485-21|CAB60370.1|  407|Caenorhabditis elegans Hypothetical...    27   9.9  
AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 649 PVDMISGSFFEAAYFRNNKLFESPDPIFIKGTF 551
           P+  ++ +F EA+ F N+K FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 649 PVDMISGSFFEAAYFRNNKLFESPDPIFIKGTF 551
           P+  ++ +F EA+ F N+K FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 385 LMIITILGVKLMVITKNIWNFLKVNTVNYSNMLTRSVFYLLPLLWTWYLSI 537
           + + T+  +KL +ITK I   + +N+VNY  +   S+ +     W +Y S+
Sbjct: 219 IALCTVCALKLKMITKEISTVISINSVNY-YLFWISIIHFSTSFW-YYFSV 267


>Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical
           protein F49E12.5a protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 YDNHNSWGKTYGDHKKHLEFSESQYRELFKYAHEIGILF 503
           Y NH  +  TY   K H+    + Y  +F +  +IG+++
Sbjct: 176 YVNHCGFYPTYSQDKFHIFLDVTLYLAVFNFVFDIGLMY 214


>Z47357-11|CAA87428.3|  303|Caenorhabditis elegans Hypothetical
           protein T16H12.9 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 291 LIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSESQYRE 467
           L K   D  AS V    TC K  FT++  ++S+D+ +    +  D  K  E  + + R+
Sbjct: 101 LAKDINDIVASQVDSNSTCTKYGFTRQQQKKSHDDDDDDDDSDSDESKEEEEKKKRDRK 159


>Z30662-12|CAA83142.3|  303|Caenorhabditis elegans Hypothetical
           protein T16H12.9 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 291 LIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSESQYRE 467
           L K   D  AS V    TC K  FT++  ++S+D+ +    +  D  K  E  + + R+
Sbjct: 101 LAKDINDIVASQVDSNSTCTKYGFTRQQQKKSHDDDDDDDDSDSDESKEEEEKKKRDRK 159


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 210 KVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSY 389
           KVG  N      E      G + I K LI + K  G S    QKTC K   T +++    
Sbjct: 182 KVGAVNTLLRKVEKHNLKAGRLAIKKTLISSCKCHGVSGSCQQKTCWKRTATLEHITDYL 241

Query: 390 DNHNSWGKTYGD 425
               +  K Y D
Sbjct: 242 VEKYARAKLYTD 253


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 210 KVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSY 389
           KVG  N      E      G + I K LI + K  G S    QKTC K   T +++    
Sbjct: 182 KVGAVNTLLRKVEKHNLKAGRLAIKKTLISSCKCHGVSGSCQQKTCWKRTATLEHITDYL 241

Query: 390 DNHNSWGKTYGD 425
               +  K Y D
Sbjct: 242 VEKYARAKLYTD 253


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 210 KVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSY 389
           KVG  N      E      G + I K LI + K  G S    QKTC K   T +++    
Sbjct: 182 KVGAVNTLLRKVEKHNLKAGRLAIKKTLISSCKCHGVSGSCQQKTCWKRTATLEHITDYL 241

Query: 390 DNHNSWGKTYGD 425
               +  K Y D
Sbjct: 242 VEKYARAKLYTD 253


>U15304-1|AAA50369.1|  407|Caenorhabditis elegans PES-10 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 333 FQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSE--SQYRELFK 476
           F    L  K+  +YL   Y +HN   +   +H KHL+  E   + +E FK
Sbjct: 269 FYPLALLRKYDIQYLIYCYGSHNEDAELLMNHIKHLQAIEIAGERQEFFK 318


>AL110485-21|CAB60370.1|  407|Caenorhabditis elegans Hypothetical
           protein Y46G5A.27 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 333 FQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSE--SQYRELFK 476
           F    L  K+  +YL   Y +HN   +   +H KHL+  E   + +E FK
Sbjct: 269 FYPLALLRKYDIQYLIYCYGSHNEDAELLMNHIKHLQAIEIAGERQEFFK 318


>AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical
           protein Y44A6D.5 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 238 IKHGLLPPTFTSSVILTSSIFKTTTSVP*KQTNENRVPVQAGSLGNKLSLRNNRFIDLPF 59
           I  GLL  +F SS +  +  F+    V  K T + R+P     LG      ++  ID+ +
Sbjct: 4   ISSGLLKRSFISSSLRCTHSFQYANLVVEKSTKKQRIPSDPAKLGFGRYF-SDHMIDIDW 62

Query: 58  KIK 50
            +K
Sbjct: 63  DVK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,944
Number of Sequences: 27780
Number of extensions: 352895
Number of successful extensions: 934
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)