Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B07
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831     29   2.0  
06_01_0758 + 5668750-5669080,5670545-5670738,5670858-5670891,567...    29   2.6  
04_04_0935 - 29509135-29511732                                         29   2.6  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    27   6.0  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    27   7.9  

>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
          Length = 512

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 365 FCFKLQVELVNFIRSCFMKLEAFSQQSLISGSPC*QRFFHQYQASNLWRW*MFVC 201
           FC+    E  N I++C  +   + ++S+ + S       H  QAS +W W  F C
Sbjct: 390 FCYSCGAEYTNGIQTC--QCVFWDEESIEAASAA-----HSTQASEIWAWDTFDC 437


>06_01_0758 +
           5668750-5669080,5670545-5670738,5670858-5670891,
           5670986-5671896
          Length = 489

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 261 TEIFPSVPSVKPVALVNVRLRT*QPR*CRQSVTDVQVTWQSFPGV 127
           T+ F      +   LV V  R  QP    Q  TDV ++W   PGV
Sbjct: 194 TQAFMFADKPEDAELVVVAFRGTQPFDMEQWSTDVDISWYEIPGV 238


>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 362 CFKLQVELVNFIRSCFMKLEAFSQQSLISG 273
           CF   VEL N +R+  M ++ F+  +LISG
Sbjct: 351 CFSKSVELFNQMRAELMAIDQFALATLISG 380


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 165 LLTDDISVAATCANEHLPTPQV*RLVLMEKSLST----WTARY*RLLR 296
           L +DD S+A+  A  +LP  QV  L  + K LS+     T  Y RLLR
Sbjct: 727 LKSDDQSIASVIAQTNLPQEQVLNLASVLKDLSSKFELSTLGYLRLLR 774


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 77  DYGLFQIYDKYWCISGSTPGKDCHVTC 157
           D+ ++Q+ D+    SG+ P K C+VTC
Sbjct: 137 DFDIYQVLDQ----SGNVPAKLCNVTC 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,228
Number of Sequences: 37544
Number of extensions: 255929
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)