Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B07
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 380 YPYKHFCFKLQVELVNFIRSCFMKLEAFSQQSL 282
           YP  HFC  ++V  + F+ +CF  + A S  SL
Sbjct: 62  YPTAHFCQMVKVSYLVFVSACFNFILAVSVNSL 94


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 106 ILVHLRVHSWKG-LPRDLYISY*LTTLAWLLRAQTNIYQRHRFDA 237
           + V +R +SW G L    YI   +  +A L+     IY +H+FDA
Sbjct: 58  LYVGIRDNSWSGTLDPSFYIPTCMIVVAVLIFIDRLIYWKHKFDA 102


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 185  RGCYVRKRTFTNATGLTLGTDGKISVNMDCQILATVE 295
            RGC    R   NA  L    D ++ VN  C +L   E
Sbjct: 1024 RGCISTLRINENALDLYEDADSRMKVNRGCSVLTLFE 1060


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,926
Number of Sequences: 27780
Number of extensions: 232298
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)