Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B05
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 197 5e-51
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 186 8e-48
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 41 7e-04
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 40 0.001
06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932 31 0.80
07_03_0039 - 12718972-12720699 29 1.8
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 1.8
04_01_0075 - 838358-838945,847120-847282,847581-847687 29 1.8
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 3.2
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 3.2
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 4.3
07_01_1125 + 10404789-10404929,10405118-10405291,10405474-10405533 28 5.6
03_02_0243 - 6744164-6744415,6744518-6745135 28 5.6
11_06_0289 - 21969248-21973516 27 7.5
07_03_1736 + 29130118-29130294,29130649-29130703,29130837-291310... 27 9.9
06_01_1168 - 9949128-9950621 27 9.9
01_06_1185 + 35218115-35218286,35218628-35218668,35219123-35219326 27 9.9
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 27 9.9
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 197 bits (480), Expect = 5e-51
Identities = 93/129 (72%), Positives = 105/129 (81%)
Frame = +1
Query: 133 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 312
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 118
Query: 313 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 492
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 119 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 178
Query: 493 YPEEMIQTG 519
YPEEMIQTG
Sbjct: 179 YPEEMIQTG 187
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 186 bits (454), Expect = 8e-48
Identities = 94/138 (68%), Positives = 105/138 (76%), Gaps = 9/138 (6%)
Frame = +1
Query: 133 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 312
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 78
Query: 313 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQ---------G 465
ID K T +FTG++L+TPVS DMLGRVFNGSGKPID GPPIL E +LDI G
Sbjct: 79 IDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAG 138
Query: 466 QPINPWSRIYPEEMIQTG 519
INP R YPEEMIQTG
Sbjct: 139 SSINPSERTYPEEMIQTG 156
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +1
Query: 148 VSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKN 327
V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+ +
Sbjct: 60 VLAVSGPVVVADGMGGAAMYELVRVG-NDNLI--GEIIRLEGDSATIQVYEETAGLMVND 116
Query: 328 TLCEFTGDILRTPVSEDMLGRVFNGSGKPI 417
+ T L + +LG +F+G +P+
Sbjct: 117 PVLR-TRKPLSVELGPGILGNIFDGIQRPL 145
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +1
Query: 121 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 300
S+ Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E
Sbjct: 13 SEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYE 69
Query: 301 GTSGIDAKNTLCEFTGDILRTPVSEDM----LGRVFNGSGKPI 417
T+G+ + + + P+S ++ LG +F+G +P+
Sbjct: 70 ETAGLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPL 112
>06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932
Length = 310
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 93 CLGCVQGFHIPA--PPHLQDSVRCKWTI 170
C+G + G H+PA P H+QD R + TI
Sbjct: 130 CIGALDGTHVPATVPAHMQDRFRGRKTI 157
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -3
Query: 386 PNMSSDTGVRRMSPVNSQRVFLASIPDVPSNTWTTAFEPLTSR 258
P+ +DT R SP S FLA +P VPS+ T+AF L R
Sbjct: 55 PSSHADTIAAR-SP-RSLHAFLAGLPAVPSSLRTSAFPSLLRR 95
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 75 PSKQGACLGCVQGFHIPA--PPHLQDSVR 155
P QG C+G + G HIPA P H+QD R
Sbjct: 132 PYFQG-CIGALDGTHIPACVPMHMQDRFR 159
>04_01_0075 - 838358-838945,847120-847282,847581-847687
Length = 285
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 44 TEKWQKPSPLPKQARSMSWLCPGISYPSPA 133
T W+ SP P A S SW G S P P+
Sbjct: 256 TSSWKVGSPAPTSASSTSWSSSGGSCPVPS 285
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 93 CLGCVQGFHIPA--PPHLQDSVR 155
C+G + G H+PA P H+QD R
Sbjct: 289 CIGALDGTHVPASVPAHMQDRFR 311
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 160 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 294
NGP+ + + KF ++ + KLAD T G + G +V V
Sbjct: 321 NGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGDSVAAV 365
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -3
Query: 266 TSRT*PERSVPSASLSCTISENLGNLT 186
T RT + S+PS SL IS +LGNLT
Sbjct: 78 TDRTVTDVSLPSRSLEGYISPSLGNLT 104
>07_01_1125 + 10404789-10404929,10405118-10405291,10405474-10405533
Length = 124
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -1
Query: 547 GVHHVNXGDYQFGSSPRGRYATTG*LVVPGCPRSPQLGLGAPC 419
G H V + +S Y+ PGCP S + + PC
Sbjct: 33 GFHCVRISSPRLRASRNSGYSVANESANPGCPLSQMIAISCPC 75
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 218 CTISENLGNLTSSKMTNGPFTPDTVL*VRRG 126
C ++E++ L S +T+ P TPDTVL V G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 19 LSGLPKSEN*KMAKTLSAAQASKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILD 183
+ G+P + ++ + A A + VLA++ + + P Y+ VN P V LD
Sbjct: 208 IGGVPGNAIVTLSIAIVAPDADNKEVLAIAHETLVAPNYYYRRSIMVNVPAVHLD 262
>07_03_1736 +
29130118-29130294,29130649-29130703,29130837-29131048,
29131201-29131322,29131406-29131559,29131849-29131918,
29132007-29132152,29132238-29132310,29132366-29132418,
29132514-29132658,29132945-29133063,29133171-29133242,
29133336-29133439,29133695-29133751,29133861-29134059,
29134169-29134312,29134418-29134537
Length = 673
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 518 PVWIISSG*IRDHGLIGCPWMSKKSSARI 432
PVW+++ G HGL+G + S+A I
Sbjct: 321 PVWVVNDGSSNLHGLLGASQNEEVSTATI 349
>06_01_1168 - 9949128-9950621
Length = 497
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 379 MLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 492
ML +F +P D F+DI G P PW ++
Sbjct: 164 MLHSLFRAMPRPADDNDDESPVRFVDIPGSPAYPWRQL 201
>01_06_1185 + 35218115-35218286,35218628-35218668,35219123-35219326
Length = 138
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 63 PLRCPSKQGACLGCVQGFHIPAPP 134
P RC +K GAC+ C H+ PP
Sbjct: 92 PPRCTAKCGACVPCYP-VHVAVPP 114
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 386 PNMSSDTGVRRMSPVNSQRVFLASIPDVPSNTWTTAF 276
P+ TGV + NSQ S+PD P + + TAF
Sbjct: 302 PDADKLTGVAILHYSNSQGPPSGSLPDAPDDQYDTAF 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,048
Number of Sequences: 37544
Number of extensions: 383796
Number of successful extensions: 1011
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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