Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B04
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 32 0.064
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.60
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.4
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.4
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 1.8
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 2.4
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 3.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 7.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 7.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 7.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.7
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.7
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 31.9 bits (69), Expect = 0.064
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 293 PSSPPTSTWRELPSSTRTESWSPL---SPPSAGTITLSPPSRAKAATSQQRGHGKW*KTL 463
P T+T + PS+T T + P+ +PP+ +P R Q R H K +T
Sbjct: 431 PQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGEPAVQTRNHSKRTRTA 490
Query: 464 TLSQYTETGR 493
T S T R
Sbjct: 491 TSSVEETTPR 500
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.60
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +2
Query: 197 TRTLQKRCLSTAASAYC*SLVTVTWRSGDALRPSSPPTSTWRELPSSTRTESWSPLSPPS 376
T T LST+ S + + T S + P+ PPTS+ L ++ T S S P +
Sbjct: 379 TGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTS--VPYT 436
Query: 377 AGTITLSPPSRAKAATS 427
+ +T +P + TS
Sbjct: 437 STPVTSTPLATTNCTTS 453
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 260 TVTWRSGDALRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPS 406
T T S + PS P + +PS + P+ PPS GT++ SPP+
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAP-PPIPPPSNGTVS-SPPN 269
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 161 ISCSVNTSQ**WVIFAKSATFSGVQLC 81
ISCS+NT + ++I A S +S QLC
Sbjct: 114 ISCSLNTQKFFFIIVAASNVYSIFQLC 140
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 199 ENTAEKVFINRSKR-ILLISSDGHLAQWRCAPTFESANV 312
+NT F ++ ++ I +S DG L W+ +P F++ V
Sbjct: 190 KNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQAGEV 228
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 269 WRSGDALRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSR 409
WR A+ +PP S +S T SW S SAGT T +R
Sbjct: 294 WRLAPAVGSLAPPPS----YSTSQPTISWDAASESSAGTTTQGDTNR 336
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 329 PSSTRTESWSPLSPPSAGTITLSPPSRA 412
P+S +TES+ L P SA IT++ RA
Sbjct: 552 PASKQTESYLLLDPKSARAITVNNDPRA 579
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 227 TAASAYC*SLVTVTWRSGDALRPSSPPTSTWRELPSST 340
+++S++ ++ + T+ S + PSS +ST E+PSST
Sbjct: 235 SSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 122 IFAKSATFSGVQLCMATVEPKLAYFFPSISCTSAGIDMD 6
I+ +TF+ + V P+ Y P I+ TSAG + D
Sbjct: 201 IYGSPSTFTQFNHMSSMVTPENPYGIPPIALTSAGGNPD 239
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 7.3
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +2
Query: 203 TLQKRCLSTAASAYC*SLVTV--TWRSGDALRPSSPPTSTWRELPSSTRTESWSPLSPPS 376
T+ LS+ +Y +L T T +G A SSP S +P+S + S S S
Sbjct: 258 TVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSS 317
Query: 377 AGTITLSPPSRAKAATSQQRG 439
+ T TL+ + + T G
Sbjct: 318 SYTTTLTASNTSVTYTGTGTG 338
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 397 STFEGEGGYFATTRPWKVVENPNTVAVYGDR--SFTSREEIREY 522
+T+ G++ T +P +PN AVY + + +E+R Y
Sbjct: 152 NTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSY 195
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 365 SPPSAGTITLSPPSRAKAAT--SQQRGHGKW*KTLTLSQYTETGRLQAGRRSASTYRVCP 538
+PP + PP K+ S R + K+ T+SQ T + AG++ T+ CP
Sbjct: 71 APPPVIVAVMGPPGTGKSTLIKSLVRRYSKY----TISQITGPITVVAGKKRRITFLECP 126
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 329 PSSTRTESWSPLSPPSAGTITLSPPSRAKAATSQQRGHG 445
P+S T + P+AGTIT + S +KA TS +G
Sbjct: 369 PASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANG 407
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 329 PSSTRTESWSPLSPPSAGTITLSPPSRAKAATSQQRGHG 445
P+S T + P+AGTIT + S +KA TS +G
Sbjct: 509 PASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANG 547
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 329 PSSTRTESWSPLSPPSAGTITLSPPSRAKAATSQQRGHG 445
P+S T + P+AGTIT + S +KA TS +G
Sbjct: 649 PASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANG 687
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 408 LEGGDSVMVPALGGDNGDQLSVLVDDGSSRHVDVGGLE 295
++ GD V+ P+ G + ++ V +GS +H+DV LE
Sbjct: 1185 MQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHIDVLELE 1222
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 310 VYMAGTPIVNKDGELVTIVTAKRGNHYA 393
+ ++GTP+ N+ GEL +++ R + +A
Sbjct: 520 ICLSGTPLQNRIGELFSLLRFLRADPFA 547
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 282 SPLRQVTVTRDQQYALAAVDKHLFCS 205
+PL Q + +R Q+Y L + +KH + S
Sbjct: 8 APLSQPSASRLQKYLLESAEKHAYDS 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,915
Number of Sequences: 5004
Number of extensions: 51796
Number of successful extensions: 200
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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