Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B03
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 135 4e-33
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 134 7e-33
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 118 8e-28
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 31 0.13
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.22
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.5
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 2.0
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 2.0
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.7
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 4.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.7
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 26 4.7
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.2
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 25 6.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 8.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.3
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 135 bits (327), Expect = 4e-33
Identities = 55/92 (59%), Positives = 76/92 (82%)
Frame = +3
Query: 303 MLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLI 482
ML++ EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE L K +I+ VEDLI
Sbjct: 133 MLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLI 192
Query: 483 HEIFTVGEKFKYASNFLWPFKLNNPTGGWRKK 578
HEI+TVG FK A+NFLWPFKL++P GGWR++
Sbjct: 193 HEIYTVGPNFKQAANFLWPFKLSSPLGGWRER 224
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 134 bits (325), Expect = 7e-33
Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Frame = +3
Query: 81 RAEQY-VRIPIKERDESD-GRQARNR-ELYVPGEAN*L-CHPYRGVTKYHPRYA-VLHCS 245
RAE Y ER++ + GR+AR YVP E + RG+ P+ ++
Sbjct: 55 RAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
Query: 246 GCVRSTTACRSSQQGHSEXMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSN 425
++ ++ ML++ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N
Sbjct: 115 RLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDN 174
Query: 426 SLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHY 590
++IE L K +I+ +EDLIHEI+TVG FK A+NF+WPF+L++P GGWR +K H+
Sbjct: 175 AIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHF 230
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 118 bits (283), Expect = 8e-28
Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Frame = +3
Query: 81 RAEQYVR-IPIKERDESD-GRQARNR-ELYVPGEAN*L-CHPYRGVTKYHPRYA-VLHCS 245
RAE ++ +ER+ R A+N+ +++VP E L GV P+ VL
Sbjct: 53 RAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
Query: 246 GCVRSTTACRSSQQGHSEXMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSN 425
R A MLRI EPY+ +G PNL SVREL+YKRGF K+NG+R+ ++ N
Sbjct: 113 RLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDN 172
Query: 426 SLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKL 548
+LIE+ L K ++I +ED+IHEI+ VG FK + FLWPF L
Sbjct: 173 ALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTL 213
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 31.1 bits (67), Expect = 0.13
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 427 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 531
HSS + L+N+ SSAL+++ + S +SSS+Q +S
Sbjct: 90 HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSS 124
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 345 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS--KQNIICVEDLIHEIFTVGEKFKY 518
N KSV + G L G ++ I+ + ++ R+ KQ ++ +E L H++ + K+
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELE-LSHKVCVISYSAKF 200
Query: 519 ASNFLWPFK 545
AS F PF+
Sbjct: 201 ASGFFGPFR 209
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 1.5
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +1
Query: 205 SPSITQGTRYCTVQAASDQQRRVVRLNKATVXTCFVSLSPILHGATPT*RVSESWCTNAV 384
S S T + ++ + AT + S SP L ++ T S S+ T+ V
Sbjct: 26 SSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSP-LSSSSFTSPASSSFITSLV 84
Query: 385 SPN*TGSVSRSPP-THSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 531
S + S S S T SS L + +S++ SS + LS SSS +S
Sbjct: 85 SSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASS 134
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 342 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 464
P LK+ REL+ K+ + V SN ++EK L +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 583 IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMF--CLLSLFSMSELEVI 413
IV++ Q + LFSL G L ++ + T+ SW ++ CLLS+ + ++ I
Sbjct: 68 IVYILQ--IFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 30 RSLKRRPFH*EEERNL*RAEQYVRIPIKERDESDGRQARNRELYVPGEAN*LCHP 194
+S++ P H + +N Y +IP K DE + V E N L HP
Sbjct: 210 KSIREEPIHHVDSKN--EEPVYSKIPEKMGDEFSENSLSKSDSAVKQEGNLLIHP 262
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 545 FEWPQEVTCVLELLTDSKYLMDEILNADDV-LFAKSLLD 432
F W CV S+Y+M +N D FA S LD
Sbjct: 125 FNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLD 163
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.7
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Frame = +1
Query: 175 LTSFVIRIVVSPSITQGTRYCTVQAASDQQRRVVRLNKATVXTCFVSLSPILH-GATPT* 351
L+S S S T + + A S + +N T + S +P+ +T
Sbjct: 441 LSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSA--SSTPLTSVNSTSAT 498
Query: 352 RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 531
S + T+A S T SVS + P++++ L + S+ +SS + +SST +TS
Sbjct: 499 SASSTPLTSANSTTST-SVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTS 557
Query: 532 CGHSN*TT 555
+ T+
Sbjct: 558 VNSTTATS 565
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 SSPSSDHSRGVRSIKKRKEIFREPNNM*EYRSRSV-MNQMADRL 144
S S D++RG+R +K E + + + +SRSV + A+RL
Sbjct: 110 SQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERL 153
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 418 PPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 546
PP HS+ D++N ++ AL S+M + ++ST+ T ++N
Sbjct: 110 PPFHSANSDVSNNSNGALS-SNMLKTHAHHTNSTKSTIFRNAN 151
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -2
Query: 517 YLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGT 407
Y++ PT+++ ++ S+ +FCL L S++ LE++ T
Sbjct: 253 YVHEYPTLDLIYIFSALMSVFCL--LLSVASLELLHT 287
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.2
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 301 TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRIS 480
T S S ++ ++P S S ++ S T S S S THSS A +SSA+ S
Sbjct: 676 TLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTS 735
Query: 481 -SMRYLLSVRSSSTQVTSCGHSN 546
+ L++ SS+T ++S S+
Sbjct: 736 VNSSTLITASSSNTLLSSITSSS 758
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 551 VQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAKSLLD 432
V+F PQ + +L +KYL D+++ D+ A L+D
Sbjct: 136 VKFTEPQIKCYMKQLFAGTKYLHDQLILHRDLKAANLLID 175
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 358 SESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 531
S S +++ S + S + +HSS ++ +SS+ R SS ++ SSST +++
Sbjct: 195 SSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,008
Number of Sequences: 5004
Number of extensions: 49295
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -