Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B03
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 144 5e-35
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 138 2e-33
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 103 8e-23
02_04_0580 + 24065830-24065967,24066163-24067425 31 0.52
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896... 27 8.5
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 8.5
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 27 8.5
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 144 bits (349), Expect = 5e-35
Identities = 62/96 (64%), Positives = 77/96 (80%)
Frame = +3
Query: 303 MLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLI 482
MLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+
Sbjct: 129 MLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLV 188
Query: 483 HEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHY 590
HEI TVG FK A+NFLWPFKL P GG +KK HY
Sbjct: 189 HEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHY 224
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 138 bits (335), Expect = 2e-33
Identities = 63/102 (61%), Positives = 78/102 (76%), Gaps = 6/102 (5%)
Frame = +3
Query: 303 MLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNII 464
MLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +II
Sbjct: 128 MLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDII 187
Query: 465 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHY 590
C+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HY
Sbjct: 188 CIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHY 229
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 103 bits (248), Expect = 8e-23
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +3
Query: 306 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIH 485
L + EP+I +G+PNLK+V++L+YK+G L+ + P+TSN LIEK L + IIC+EDL+H
Sbjct: 132 LLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVH 191
Query: 486 EIFTVGEKFKYASNFLWPFKLNNP 557
EI +VG F+ ASNFL PFKL P
Sbjct: 192 EIASVGPHFREASNFLMPFKLKCP 215
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 31.5 bits (68), Expect = 0.52
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +3
Query: 249 CVRSTTACRSSQQGHSEXMLRIAEPYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITS 422
C S+++ SS + + + + P A G+ + E+ + FA NG+ + S
Sbjct: 58 CFLSSSSLASSFETMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALS 117
Query: 423 NSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 575
+ I+ L V +L +E+F +S F++P+K+ T G K
Sbjct: 118 RAQIDSVLDLARCTIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167
>11_03_0014 -
8965966-8965989,8966788-8966920,8967447-8967529,
8967690-8967986,8970067-8970165
Length = 211
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 264 TACRSSQQGHSEXMLRIAEPYIA 332
T RS+ GH+E LR AE YI+
Sbjct: 187 TLARSAAAGHAEDWLRAAEKYIS 209
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 448 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 326
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Frame = -1
Query: 500 DSKYLMDEILNADD-VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQVGVA---- 336
D K + ++ N D+ V + +++ V GD D P G LSDT+ + A
Sbjct: 380 DGKKEIVKVNNPDETVAYGAAVIGRHVAGDDDDKPTMLGPLDLPSFLSDTISIETAGGAV 439
Query: 335 ----PCNIGL-SDTKHVFTVALLRRT 273
P L ++ HVFT L R+T
Sbjct: 440 TPMIPRRSRLPAERTHVFTTYLGRQT 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,442
Number of Sequences: 37544
Number of extensions: 320152
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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