Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B03
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   156   1e-38
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  156 bits (379), Expect = 1e-38
 Identities = 65/96 (67%), Positives = 81/96 (84%)
 Frame = +3

Query: 303 MLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLI 482
           +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC+EDL 
Sbjct: 128 LLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLA 187

Query: 483 HEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHY 590
           HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+
Sbjct: 188 HEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHF 223



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 206 HQVSPKVR-GIALFRLRQINNGV 271
           +Q+ PK R  + + RLRQINNGV
Sbjct: 95  NQLHPKPRKALQILRLRQINNGV 117


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 447 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTI 584
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRI 113


>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
           protein T21C9.2 protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 124 SSRSLIGILT-YCSAL*RFLS-SS*WNGRLLSDLKTASSEC 8
           SS ++I +L+ YC A+    S S  WN R++  LKT +S C
Sbjct: 826 SSITMIQLLSDYCEAISEMPSFSQDWNSRVVELLKTFNSRC 866


>Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical
           protein F36D3.8 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 49  RSIKKRKEIFREPNNM*EYRSRSVMNQMADRLVTVNYMC 165
           R + KR++I+R  ++  EYR R +  +   R++ V   C
Sbjct: 426 RPVFKREDIYRWSDSFPEYRLRMICLKDTTRVIAVGQYC 464


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 447 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 560
           S+Q+  C    +H +  + ++F +    LW  +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398


>Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical
           protein T27F6.4 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +3

Query: 243 SGCVRSTTACRSSQQGHSEXMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITS 422
           S    STTA  SS  G     +   +P    GY     ++     +      G  VP+T 
Sbjct: 20  SSLTSSTTATSSSSTGGVRKQILTLKPKQPNGYVQHLEIKAKESSQSSVISGGVPVPVTL 79

Query: 423 NSLIEKRLSKQNII 464
             L +K  S++N++
Sbjct: 80  LELKKKDRSEKNVV 93


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +1

Query: 106 RSRSVMNQMADRLVTVNYMCPVKLTSFVIRIVVSPSITQGTRYCTVQAASDQQRRVVRLN 285
           RSR   N   +R  + +  CP KL      + + P+ T G     V      + R  R N
Sbjct: 71  RSRRASNSPGERQWSSSQRCPNKLRVIGYSLQIEPNNTAGANNIAVFCGDGSEPRSKRFN 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,886
Number of Sequences: 27780
Number of extensions: 269348
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)