Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B02
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0517 - 25118232-25118730,25119002-25119273 28 1.8
03_02_0269 + 7001891-7002212,7003598-7004037 28 1.8
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 3.1
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 26 7.1
07_01_0601 + 4464745-4465010,4465274-4466582 26 7.1
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 7.1
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 26 9.3
04_01_0072 - 784922-785567,785673-786406 26 9.3
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 26 9.3
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 33 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 143
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 168 SHHGREGCRIAWVDNWDD*NRR 103
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 126 YPPKRYDNPLARGGK 170
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 36 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 134
P FS P+ P+G ++E ++ P F N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 6 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 101
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 164 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 63
+TG +V + L W++G E R +A G++ +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 NSDHVVIANPDPFFSQPSNGPSGNYEPIS-TGPAFVDFNHPNYPP 134
N HV P P +S P G Y P G V N P YPP
Sbjct: 357 NEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN-PYYPP 400
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 39 FFSQPSNGP--SGNYEPISTGPAFVD 110
FFS+PS GP SGN++ + +D
Sbjct: 66 FFSRPSKGPTVSGNFDYLPCSSCIID 91
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 33 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 155
+PF + S G S S G + + P+ PP + +PL
Sbjct: 298 NPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPL 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,246,675
Number of Sequences: 37544
Number of extensions: 127693
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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