Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B01
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   0.37 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   1.1  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   2.6  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   3.5  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    24   4.6  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    23   6.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    23   6.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    23   8.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   8.0  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 88  PTGAPPSACFDMIPGHAADVQTVPAPYT--ITTAVSSVKAGHSIDVVISGKTP 240
           P     S  F+ IP    +V+++   Y+  + T +S +KA   +  ++ GK P
Sbjct: 257 PANYITSTAFESIPESGHNVRSLEITYSGSLLTNISLIKADDLVGALVDGKLP 309


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -3

Query: 258  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 133
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 154 VPAPYTITTAVSSVKAGHSIDVVISG 231
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 273 SFQEDAGHFVFGCFAADNHVNGMTSF 196
           +F+E+ GH   G      HV GM S+
Sbjct: 27  TFEENRGHSFEGVTLQRRHVKGMKSY 52


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 165 RRWYCLNISSVPWDHV 118
           RRW   N+ S+PW HV
Sbjct: 59  RRW---NLQSLPWQHV 71


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   LPEIYRKDDVHLRSSSC 59
           +PE+Y+++DV L    C
Sbjct: 721 IPEVYKREDVDLVRKGC 737


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 117 EARARRCSGGVSAGKRHHRCNCYYVSEHHL 28
           E    RC+   S GK    C C +  E+ L
Sbjct: 249 EGGCPRCNSASSCGKELDTCLCLHAEENAL 278


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 ALHHHYSCQLGKSWSF 209
           +LH   +C+ GKSW +
Sbjct: 501 SLHDSGTCETGKSWMY 516


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 88   PTGAPPSACFDMIPGHAADVQTVPAPY----TITTAVSSVKAGHS 210
            P    PSA    +P   A    VPAP     +++T  SSV + HS
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHS 1261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,151
Number of Sequences: 5004
Number of extensions: 21229
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)