Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A23
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    29   3.3  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    27   10.0 

>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 328 ILSVQLSKAFVFLQKYRNKNTTFFM*LISFFN 423
           I+SV+ S A  FL+ Y NK+ T+   LI FF+
Sbjct: 150 IVSVERSCASYFLEDYENKSRTWIALLIIFFS 181


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 252 IRILCIILMFKKRKS---SRNSWQISYHNFIGTIIQSFCIFTXXXXXXXXXLYVTYFFF 419
           I +L +  +FK+ KS   S  S+Q+  +  I   +QSF  F          LYV  F++
Sbjct: 208 IFLLTLYQLFKRNKSFKLSSRSYQLQKNFLIAITLQSFLSFIFIIVPVNIILYVVVFWY 266


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 260 YPYKHFCFKLQLELVNFIRSCFMKFKAFSQQSL 162
           YP  HFC  +++  + F+ +CF    A S  SL
Sbjct: 62  YPTAHFCQMVKVSYLVFVSACFNFILAVSVNSL 94


>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 410 ISYIKNVVFLFLYFCKNTKA 351
           ISY+  ++ +FL +CKN K+
Sbjct: 174 ISYLAYLIIIFLIYCKNIKS 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,059
Number of Sequences: 27780
Number of extensions: 244033
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)