Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A21
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   1.5  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   8.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.2  

>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 167 GYDD--TCICFAACQYGEEENTKLYVIVEFLSESQPGGSYLDA 45
           GYDD   CI FA C Y +    K     + LS  Q G  ++ A
Sbjct: 320 GYDDGDLCIHFAGCNYFKNCPEKFLKYAQILSSKQ-GSDWMSA 361


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 75  FGQELYYHIKLRVFFFAVLACCETDARVIITLLYPGQGYV 194
           F +E  +H+ +  +  AVL+ C   AR  +  +  G  ++
Sbjct: 145 FPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHI 184


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 113  FLLRRIGMLRNRCTCHHNLIISRPGL 190
            FLL +   L  +C C  N +IS+ GL
Sbjct: 1505 FLLPKALNLLEKCICQENSMISKVGL 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,461
Number of Sequences: 5004
Number of extensions: 43510
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)