Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A21
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     32   0.29 
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.5  
04_01_0343 - 4481651-4482553,4485144-4485857                           28   4.7  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    27   8.2  

>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 389 TTGERVVVSLGWIIGMIEIDERRSSAYGFINSGKDRLMLERRKDPG 252
           +TG +V + L W++G     E R +A G++   +D   ++ R  PG
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSRDSECVDSRNGPG 278


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 393 SHHGREGRRIAWVDNWDD*NRR 328
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>04_01_0343 - 4481651-4482553,4485144-4485857
          Length = 538

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +2

Query: 41  WRRLNMIPRAEIRTGTLLSHKASCFLLRRIGMLRNRCT 154
           W+RL+M+ +++ R   L+S+  +CFLLRR    +NR T
Sbjct: 456 WKRLHMLFQSKGRK-ELVSYYFNCFLLRR-RCYQNRMT 491


>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
            3400345-3400610,3400793-3400864,3401023-3401098,
            3401241-3401339,3401432-3401586,3401679-3401783,
            3401880-3401966,3402459-3402543,3402626-3402734,
            3403468-3403544,3403635-3403715,3404137-3404328,
            3404415-3404528,3404650-3404742,3404864-3404990,
            3405075-3405151,3405455-3405502,3405588-3405657,
            3405737-3405810,3405895-3406005,3406222-3406300,
            3406936-3408320
          Length = 1293

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 260  PFFSQASNGP-YRNL*THKHWTGVRRFQSSQLSTQAI 367
            P+F    N P +R +  HKHW   R  + S  S + +
Sbjct: 897  PYFHSGRNSPSFRRMEQHKHWCVNRLLERSNHSLEPL 933


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,108
Number of Sequences: 37544
Number of extensions: 312697
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)