Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A19
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    33   0.13 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.13 
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    27   6.6  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    27   6.6  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    27   6.6  
U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in bl...    27   8.7  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 441 CP-VTPEFNPVCGSDYQTYSNPGRL 512
           CP  T EF  VCGSD +TYSN  RL
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRL 489


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 441 CP-VTPEFNPVCGSDYQTYSNPGRL 512
           CP  T EF  VCGSD +TYSN  RL
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRL 497


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSN 500
           S E+C  T P   E+NPVC    QT++N
Sbjct: 115 SQEKCSCTAPCPTEWNPVCDKKGQTHAN 142


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSN 500
           S E C   C  T + +P+C SD+ TY N
Sbjct: 582 SKEACQMPC--TDDKHPICASDFSTYEN 607


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   TSLYRATKIDHIHFLNYYNLKWISCAQFLFWV 99
           T L   T I HIHF ++  +  I C   + WV
Sbjct: 478 TFLPHKTIIPHIHFTSFQQVAVIICLSLIIWV 509


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQ-TYSNPGRLTCWQACGV 536
           ++E C   C     FNPVC  D + T+ +P    C    G+
Sbjct: 441 ALETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGI 481


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTC 518
           S+ +  ++C   P+  P C     TY+ P + +C
Sbjct: 21  SIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSC 54


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTC 518
           S+ +  ++C   P+  P C     TY+ P + +C
Sbjct: 21  SIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSC 54


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTC 518
           S+ +  ++C   P+  P C     TY+ P + +C
Sbjct: 21  SIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSC 54


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTC 518
           S+ +  ++C   P+  P C     TY+ P + +C
Sbjct: 21  SIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSC 54


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 417 SVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTC 518
           S  E  ++C   P   P C     TY+ P + +C
Sbjct: 23  STREKRQSCGCAPRVQPSCSCQQTTYAQPPQYSC 56


>U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 3 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 411 SPSVEECMRTCPVTPEFNPVCGSDYQTYSNPGRLTCWQAC 530
           +P+ ++C  +C  T +    C    Q  S P    C  AC
Sbjct: 111 APACQQCQNSCQQTQQCQQQCTPQCQQPSTPQCQQCQSAC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,124
Number of Sequences: 27780
Number of extensions: 226546
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)