Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A18
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.13
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 0.95
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 1.7
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 2.2
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 2.2
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 24 3.8
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 24 3.8
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 24 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 5.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 23 5.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 23 5.1
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 5.1
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 23 6.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 23 6.7
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 23 8.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 8.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 23 8.9
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 23 8.9
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 23 8.9
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 23 8.9
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 23 8.9
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.13
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -1
Query: 181 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 101
+G ++ KS CS PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 93 DNVDQVYDAWDVKVNGAIYVWQ 28
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 52 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 147
Y D P I+ V +N+ D T + NP + D
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 124 ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 243
+R+P + Y + P N +NA A+NY+ + A H
Sbjct: 451 DRDPSTS-YLKTVIFPTNEQTHRNARIAMNYYSRAAARNH 489
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 2.2
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 112 YYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPT 240
Y TP Y P Y P R+P Q+ A + NG PT
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVAPS---PNGTPT 629
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 109 DYYTPERNPKEADYTAPIYAPQNRDPLQ 192
+YY P++N + Y P PQ P Q
Sbjct: 25 NYYPPQQNYPQQGYAPPQGYPQGGYPAQ 52
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 19 ISVLPNVNSSIYFDVPSII 75
I+VLP+++ S + D PSI+
Sbjct: 191 INVLPSISPSSFLDSPSIM 209
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 55 FDVPSIINLVDIVNIQAFDYYTPERNPKEA-DY 150
FDV ++N+ + + +D Y E P + DY
Sbjct: 189 FDVHDVLNVFQVTGLNEYDQYFMETCPATSKDY 221
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.4 bits (48), Expect = 5.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 84 DQVYDAWDVKVNGAI 40
DQ++DAWD + G +
Sbjct: 826 DQIFDAWDKERKGTL 840
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 7 MQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNP 135
+Q +++LP V SS+ S+ + + + Q DY +R P
Sbjct: 523 LQFPLAMLPTVISSLLEASVSVSRIYEFLIAQELDYNGVQRFP 565
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 43 SSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIY 165
S +Y PS+ VN + +YY P P + P Y
Sbjct: 258 SVMYNHFPSVPIPPATVNDTSMEYYLPNAYPHPTGISLPFY 298
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 154 APIYAPQNRDPLQNADAAINY--WIQNGAPTHKLVL 255
+PI +PQN LQN D A + W P L +
Sbjct: 592 SPISSPQNIVALQNMDPAAGWGEWFAVSIPVSLLCI 627
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 4 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYT 120
N ++ISV+ NSS Y ++ + ++ AF YT
Sbjct: 358 NAVIIISVISVTNSSTYTAGRTLHGMANLKQAPAFFKYT 396
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 80 WSTLSTSRHLTIIHLNV 130
WSTLST++ + I+ ++V
Sbjct: 1288 WSTLSTNKRVRILDVSV 1304
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 160 IYAPQNRDPLQNADAAINYWIQNGAP 237
+Y P +DP + A++ + N AP
Sbjct: 7 VYVPPPKDPPSYEEVALHSALNNSAP 32
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 31 PNVNSSIYFDVPSIINLVDIVNIQAFDYYTP 123
P++ +S FD+ S++ ++ + + Y+TP
Sbjct: 3092 PDMIASSGFDIVSVVLMMGVKSTNERQYWTP 3122
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 145 PPLWG-YVQVYNSQMPG 98
PP++G + VYN Q PG
Sbjct: 788 PPIFGGHSNVYNRQQPG 804
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 22.6 bits (46), Expect = 8.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 126 FRCIIVKCLDV 94
FRCII +C+D+
Sbjct: 244 FRCIIKECVDI 254
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 168 TAEPRSSTKRRRCYKLLDS 224
T EPR + +R+ KL+DS
Sbjct: 275 TTEPRQTHWKRKLLKLIDS 293
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 101 WMLTMSTKFMMLGTSK*MELFTFGKTL 21
W L K ++ G SK LF FG+ +
Sbjct: 39 WNLETDPKTLLHGCSKCGSLFIFGRNI 65
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 22.6 bits (46), Expect = 8.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = +1
Query: 49 IYFDVPSIINLVDIVNIQAFDYYTPE---------RNPKEADYTAPIYAPQNRDP 186
+ F+ SI + D+ I + YTPE + +E Y P Y + DP
Sbjct: 21 LLFNHGSIEGMEDLTEISMLEDYTPEAANKDYVGQQEEEELLYDQPSYIEEEEDP 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,051,475
Number of Sequences: 5004
Number of extensions: 18745
Number of successful extensions: 65
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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