Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A16
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     27   4.6  
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173...    27   6.0  
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064...    27   6.0  
01_06_1049 - 34114487-34114579,34115406-34115557,34115840-341164...    27   6.0  
01_05_0645 - 23899579-23904483                                         27   6.0  
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    27   8.0  

>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 409 YRHFLRL*SFNSSFKEIEFLCFIIYIYISEICLKTDF 299
           Y+   R+   +     +E+    IYI ISE+C+KT F
Sbjct: 671 YKAAHRIRGADGGLLTVEYQIPEIYICISEVCIKTSF 707


>09_06_0001 +
           20114108-20115686,20115813-20115928,20116416-20117394,
           20118820-20119082
          Length = 978

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 IEFLCFIIYIYISEICLKTDF 299
           +E+    IYI ISE+C+KT F
Sbjct: 787 VEYQIPEIYICISEVCIKTSF 807


>02_02_0536 +
           11304298-11304400,11304731-11305797,11306026-11306416,
           11307164-11308041
          Length = 812

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 IEFLCFIIYIYISEICLKTDF 299
           +E+    IYI ISE+C+KT F
Sbjct: 737 VEYQIPEIYICISEVCIKTSF 757


>01_06_1049 -
           34114487-34114579,34115406-34115557,34115840-34116418,
           34117551-34117941,34118170-34118583
          Length = 542

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 IEFLCFIIYIYISEICLKTDF 299
           +E+    IYI ISE+C+KT F
Sbjct: 357 VEYQIPEIYICISEVCIKTSF 377


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361  IEFLCFIIYIYISEICLKTDF 299
            +E+    IYI ISE+C+KT F
Sbjct: 992  VEYQIPEIYICISEVCIKTSF 1012


>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 IEFLCFIIYIYISEICLKTDF 299
           +E+    IYI ISE+C+KT F
Sbjct: 755 VEYQIPEIYICISELCIKTSF 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,408,370
Number of Sequences: 37544
Number of extensions: 169575
Number of successful extensions: 313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)