Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A14
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   1.8  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          27   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.3  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    26   5.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.6  

>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 460 NPYVQKMLVD-KRAVLARVNSCIIVVICCQHSKWILPCLKSSRSIIEYE 317
           NP    +L D  +  L +++S  + ++C    KW+L C  SS+ +++ E
Sbjct: 201 NPVSHAVLYDCSQETLKKISSAQVPIVCVS-PKWVLACY-SSKYLVDEE 247


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 507 IANSFDTTFKLWLLDRIHTYRKCLSIS 427
           I + FDT+F LWL ++I    K  + S
Sbjct: 59  IGSDFDTSFSLWLFNQIEELEKSKNAS 85


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 498  SFDTTFKLWLLDRIHTYRKCL 436
            S+D+  KLW+ DR+H   K L
Sbjct: 1181 SYDSHHKLWIQDRLHDILKAL 1201


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 479 LNVVSKELAIKPLNRIGVDSSKLIKNDNSKCN 574
           LN   KE+ I  L+ +     K + NDN K N
Sbjct: 273 LNTTPKEMQISSLDAVDKLEDKPVSNDNIKAN 304


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 314 TFVFNNAPRRLQTRKYPFRVL 376
           TFV NN  +R++ R+YP+ V+
Sbjct: 304 TFVVNNEGKRVRGRRYPWGVV 324


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 516 RGFIANSFDTTFKLW 472
           R F++ SFD T KLW
Sbjct: 323 RSFLSTSFDKTIKLW 337


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 394 LCNYLHVPIQPAYRQAFSVRMDSIQEP*LERRVKRVS 504
           LC YLH    PAY + FS+   +I    LE  V  V+
Sbjct: 240 LCEYLHEHSDPAYAKNFSLITPTILSM-LELNVSEVT 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,381
Number of Sequences: 5004
Number of extensions: 52623
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)