Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A13
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.11 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.34 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.8  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    27   1.8  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   3.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   3.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.2  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   5.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   5.5  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   5.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   5.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   7.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 164 STSSSPAPREMPSGTPPMRLPFITPP 87
           STS+ P P  +PS  PP R+P ++ P
Sbjct: 226 STSAPPIPPSIPSSRPPERVPSLSAP 251


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 176  VQIPSTSSSPAPREMPSGTPPMRLPFITPP 87
            V +PS  + P P  +PS  PP+ +P  TPP
Sbjct: 1024 VPLPSADAPPIP--VPSTAPPVPIPTSTPP 1051



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 167  PSTSSSPAPREMPSGTPPMRLPFITPP 87
            PS ++ P P  +PSG PP+  P +  P
Sbjct: 1126 PSVAAPPVP--VPSGAPPVPKPSVAAP 1150



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 170  IPSTSSSPAPREMPSGTPPMRLPFITPP 87
            IP+ S +P P   PSG PP+  P +  P
Sbjct: 1076 IPAPSGAP-PVPAPSGIPPVPKPSVAAP 1102



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 167  PSTSSSPAPREMPSGTPPMRLPFITPP 87
            PS ++ P P   PSG PP+  P +  P
Sbjct: 1145 PSVAAPPVPA--PSGAPPVPKPSVAAP 1169



 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 170  IPSTSSSPAPREMPSGTPPMRLPFITPP 87
            +P  S +  P   PSG PP+  P +  P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131



 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 170  IPSTSSSPAPREMPSGTPPMRLPFITPP 87
            +P+ SS       PSG PP+  P   PP
Sbjct: 1066 VPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 173 QIPSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLVMANND 42
           +IP  S SP  R   S TPP+  P   P N + V  +     ND
Sbjct: 254 EIPKPSESP--RRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKND 295


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 107 LPFITPPNANDVVSDLVMANNDKITIFENISHQ 9
           LP       NDVV+++  A+ + + I +N++H+
Sbjct: 25  LPPYQADTVNDVVNEIRAADRESLGILQNVTHE 57


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 167 PSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLV 57
           PS + +P+   +PSG PP     + PP ++    D++
Sbjct: 108 PSLNRNPSLSNIPSGVPPAFARTLLPPVSSIASPDIL 144


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 232 PGGWLKVPLEQCIEGTTCNAHLGKCSEQPVPECN 333
           PGGWL+V  + C  G+     +     +P+P C+
Sbjct: 56  PGGWLQVASKTCKPGSLI-VGVDLAPIKPIPNCH 88


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  WCEMFSKIVILSLFAITRSLTT 75
           WCE F +++I  +FAI  + T+
Sbjct: 384 WCENFRRVLIRGIFAIMDARTS 405


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 301 CLNERCMSSPQCIVLEVPSTIRQVKARRSRHEYSSGRPRLIECRFLLHPVHQ 146
           C N++C SSP+   L+V      ++    + E+  G    I+   LL    Q
Sbjct: 11  CSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQ 62


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 72  DIVSVWWRDEWQPHGWSATWHL 137
           D  S  W D W PH     W L
Sbjct: 24  DSPSAGWNDPWSPHSSRYHWQL 45


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 99  EWQPHGWSATWHLPRCW*TGCRRNL 173
           EW  + WS   H P  W    R NL
Sbjct: 319 EWIANNWSYYRHQPPAWHNSIRHNL 343


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/64 (20%), Positives = 29/64 (45%)
 Frame = -2

Query: 197 WQATPD*VQIPSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLVMANNDKITIFENI 18
           W+   D  +  S++    P  MP  T    L       A +++ D+V+ +N+K   +  +
Sbjct: 158 WEIDTDPYENGSSNEIVYPESMPYQTNLYELNNTLITAAMEIIKDVVLEDNEKAASYRKL 217

Query: 17  SHQN 6
            +++
Sbjct: 218 YNES 221


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 301  KCSEQPVPECNFHDQQFRHTCE 366
            KCSEQ +     HD  + H C+
Sbjct: 1014 KCSEQNINFAAVHDSYWTHACD 1035


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 304  CSEQPVPECNFHDQQFRHTCEQVGIFPDAVDCRKFHLCSP 423
            CS   + ECN H QQ       +GIF     C   +L  P
Sbjct: 1856 CSFNGIGECNLHMQQ---CASDIGIFLIVKKCAILYLNPP 1892


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 166 LLHPVHQHLGRCQVALH 116
           LLH +   +G+CQV LH
Sbjct: 543 LLHELLSRMGKCQVLLH 559


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 232 VKARRSRHEYSSGRPRL 182
           + A  S+H YSSGRP +
Sbjct: 179 IMAADSKHNYSSGRPSI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,224
Number of Sequences: 5004
Number of extensions: 52496
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)