Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A12
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 31 0.14
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 28 1.3
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 28 1.3
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 3.9
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 5.2
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 5.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.8
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 9.0
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 9.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 9.0
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 459 QKSYHRDNWLVAAKRS*RRCVQGHHCQELRRLLGR--NRISPRKGSKSLNHV 608
Q+ + D W+ R R C++ H+ Q+ RR + + I+P K +K +N +
Sbjct: 706 QQRFPVDEWVALYDRLIRNCIKAHNKQQQRRSIKSFFSCITPNKPTKDVNDI 757
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 287 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 421
Y+C + +S G L SED ++ W K GLI+ F + E+ Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -2
Query: 358 FAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLE-PDHAGVVRRRALPPRRHSARLE 182
F+P+ + ++ L H+R + + + ++ + P +++ ++ + R L + H +L
Sbjct: 35 FSPQCLFIVYFFYLLHVRINTSPLFIKTTTRPTALIHITKYSEALASRLL--KGHMTQLS 92
Query: 181 RNTVRPPVVTPTAHRFRPT 125
T+ PP T HR +PT
Sbjct: 93 LRTILPPAHTKNLHRQQPT 111
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 553 FWVGIESAPVKVLSH*IMSVIIT 621
F +GI++A + VL+H I +VI+T
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILT 343
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 552 DGVALDNGDLEHNVAMNAWLPQAS 481
D ++ DNG L+ +V WLP+ S
Sbjct: 360 DSISRDNGWLKEDVVDQLWLPKRS 383
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 233 SCTPTSVAATPTLCTLGTKHRA 168
+C+P S AT TL TL HRA
Sbjct: 301 NCSPDSYNATETLSTLRFGHRA 322
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 404 SPYAY*TSGSSQLLPFCSTRGF 339
SPYA+ T S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 286 PPQSNSPPGSVLEPDHAGVVRRRALPPRRHSARLERNTV 170
PP S+ P G V E + V+ + A P + R NTV
Sbjct: 98 PPVSDQPVGIVHEDESYVVIDKPAGVPVHPTGRYNHNTV 136
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 485 ACGSQAFIATLCSRSPLSRATPSSGSESNQPP 580
A S +F + SRS +S AT S S PP
Sbjct: 648 AVPSMSFANNISSRSVISAATDSKPSTRTSPP 679
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 468 NFSGTSC*KLFILKDR*AVLSQSL 397
N G S KLFI+KD V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 427 GSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNSPPGS 257
GS G F+ RT LD + + V++L ++ + + Y+L + PP + PP S
Sbjct: 129 GSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPAS 188
Query: 256 VLE 248
V+E
Sbjct: 189 VIE 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,918
Number of Sequences: 5004
Number of extensions: 55203
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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