Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A10
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   1.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.2  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   7.4  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   9.8  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 126 PNGGSSSKHPSTQQATPRTASQPVIKVGETQP 221
           P GGS   HP     +PRT + P+   G   P
Sbjct: 279 PFGGSPVMHPPVSNLSPRTPAVPMSSDGHLAP 310


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 123 RPNGGSSSKHPSTQQATPRTASQPVIK 203
           RP+ G   +HP  +QA P ++  P+IK
Sbjct: 625 RPSSGELLRHPFLKQAVPVSSLIPLIK 651


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 283 NSVNLNGFSRVTFAFFLTRRFGWVSPTL 200
           N++N  GF R  +  F    FGW+S  +
Sbjct: 67  NAMNEIGFGRYQWYLFFVAGFGWMSDNI 94


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 331 SELIQFIFLSFRVPYLNSVNLNGFSRVTFAFFLTR 227
           ++L  +    + V +LNS   + +S +T A+F TR
Sbjct: 273 TKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQTR 307


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 13  FLSVNPVLENLKVRDLSSQASSMDTVSVVCCDYNKY 120
           F SVN     LK R +++   S   V   CC + +Y
Sbjct: 46  FYSVNAFSPLLKARRMTATIVSNHNVGCSCCYFRQY 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,309
Number of Sequences: 5004
Number of extensions: 39148
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)