Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A10
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm rec...    29   2.9  
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    27   9.0  
AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical...    27   9.0  

>AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm
           receptor protein 82 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 393 QYGFGDKLIIFFARLYIL*NVLQRIIILK*HNKMQYDYLLFLPQF 527
           +YG    L++  A LY + + ++ +IIL  +   +Y+YLL+  QF
Sbjct: 37  EYGSYKLLMMVMATLYAIYSAIE-VIILPSYLVFEYNYLLYTTQF 80


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 473 NYNSL*NISQNIQSCKKNY*FIPKTILANKNYILRNKIILSKR 345
           +Y+ L    +   + KK++  +PK ++ N NY  R +II   R
Sbjct: 85  SYDGLKKFLKKKTTKKKHFTLVPKLLIFNVNYFYRIQIIACPR 127


>AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical
           protein Y47D3A.31 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 16  LSVNPVLENLKVRDLSSQASSMDTVSVVCCDYNKYKDQTGVVHQNT 153
           ++V P +  +  R + ++  SMD V  +C  Y  +      +H NT
Sbjct: 75  INVQPFINCVDTR-MEAEVESMDKVLAICERYKAFTQNESKLHTNT 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,680
Number of Sequences: 27780
Number of extensions: 215254
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)