Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A06
         (147 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   2.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    18   9.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = +1

Query: 55  WHGCATECTWSSYLYIRPVT 114
           W G  ++C W   +    VT
Sbjct: 357 WSGFCSQCIWQEKIVFAAVT 376



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 75  LCCAAMPIR-RRRXHESFHCR 16
           + CA  P R RRR   +F C+
Sbjct: 404 ILCACCPGRVRRRYQPAFRCK 424


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 51  VLAWLRNRVHVVIIPIYQASHWWT 122
           VL WL     ++ IP Y    W+T
Sbjct: 530 VLGWLCGLSSMLCIPGYMIYIWFT 553


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 51  VLAWLRNRVHVVIIPIYQASHWWT 122
           VL WL     ++ IP Y    W+T
Sbjct: 583 VLGWLCGLSSMLCIPGYMIYIWFT 606


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  SFRVFFFAVLAWLRNRVHVVIIPIY 101
           +F +FF  +LAW      V +I +Y
Sbjct: 284 AFTIFFLFLLAWTPYAT-VALIGVY 307


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 147 YCRPMNTTMSTSDW 106
           +C+P   TMS   W
Sbjct: 24  FCQPTQRTMSKIQW 37



 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 131 TPLCPPVTGL 102
           +PLCPP   L
Sbjct: 209 SPLCPPAPRL 218


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  SFRVFFFAVLAWLRNRVHVVIIPIY 101
           +F +FF  +LAW      V +I +Y
Sbjct: 284 AFTIFFLFLLAWTPYAT-VALIGVY 307


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 86  HHTYISGQSL 115
           HHTYI  +SL
Sbjct: 41  HHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 86  HHTYISGQSL 115
           HHTYI  +SL
Sbjct: 41  HHTYIIYESL 50


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 18 DNESFRVFFFAVLAWLRNRV 77
          ++  FRV  F   +W+ +R+
Sbjct: 28 EDMDFRVDMFVRQSWIESRL 47


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 6   LTLFDNESFRVFFFAVLAWLRN 71
           LT  D   F+  FF  +  LRN
Sbjct: 347 LTHIDARMFKDLFFLQILDLRN 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,693
Number of Sequences: 438
Number of extensions: 574
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 29
effective length of database: 133,641
effective search space used:  2539179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)