Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A05
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152...    37   0.012
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291...    37   0.016

>08_02_0180 +
           13912769-13913008,13914723-13915006,13915118-13915214,
           13915358-13915393,13916665-13916810,13917002-13917107,
           13917358-13917417,13917787-13917876
          Length = 352

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +2

Query: 386 QEVLGDEKLTEILKTRDLKI-YWGTATTGRPHVAY-FVPMSKIADFLKAGCEVTILFADL 559
           +E + +++L  +L+ + + I Y G   +GR H+A   V    +   ++AGC+V I  AD 
Sbjct: 46  EECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRAGCKVKIWIADW 105

Query: 560 HAYLDNMKAPWELLSLRT 613
            A L+N K   +L  ++T
Sbjct: 106 FAQLNN-KMGGDLKKIQT 122


>08_01_0325 +
           2917942-2918193,2919057-2919340,2919453-2919549,
           2919677-2919712,2920570-2920715,2920882-2920987,
           2921160-2921219,2921848-2921898
          Length = 343

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 386 QEVLGDEKLTEILKTRDLKI-YWGTATTGRPHVAY-FVPMSKIADFLKAGCEVTILFADL 559
           +E + +++L  +L+ + + I Y G   +GR H+A   V    +   ++AGC+V I  AD 
Sbjct: 50  EECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRAGCKVKIWIADW 109

Query: 560 HAYLDN 577
            A L+N
Sbjct: 110 FAQLNN 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,558
Number of Sequences: 37544
Number of extensions: 252939
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)