Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A04
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 36 0.002
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 28 0.62
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.1
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.3
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 26 3.3
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 4.4
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 4.4
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.4
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 25 4.4
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 25 5.8
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 25 5.8
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 5.8
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 7.7
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +2
Query: 50 KQDTQNVPVSLSGDTVQD----NLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQST 217
K +++ V++SG +++ N + +VEA + L+ TTE P N ++A ++
Sbjct: 241 KCESEGRLVNVSGFYIENRASYNANASINSVEAAQNAAPNLNATTEQPKNTAEVAQGAAS 300
Query: 218 VKAYDAEESKKEAVETPINVGKDVKAVVEAXXXXXXXXXXVTLPSEANIQSDVXK 382
KA +++ ++ + N A V A + + S+ ++SD K
Sbjct: 301 AKA--PQQTTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSSDIGLRSDSSK 353
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.62
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 44 TNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNP-TQIANDQSTV 220
+N + + V S+SG + NL + K A SST L T+ TNP T +++ + +
Sbjct: 381 SNSKSKKKV-TSISGTSFFKNLASSTKPTSASSSTKAPL---TKQQTNPSTPLSSIMAGL 436
Query: 221 KAYDAEESKKEAVET 265
K + E+ K + +
Sbjct: 437 KGREKEKDKDSGISS 451
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 263 FQLLPFCFLLHRKLSLY 213
F + FCFLLH LSLY
Sbjct: 325 FDIESFCFLLHHLLSLY 341
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 5 IPISTTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKT---RKTVEADSSTLKGLD-ITT 172
IPI + SN+ +T N+PVS DT + + K +E+ SS + D ++T
Sbjct: 96 IPILNSATSNIRLTPSDTYNNIPVS---DTNNEEISKNIYGAPILESTSSDFQSKDSLST 152
Query: 173 EAPTNPTQIANDQSTVKAYDAEESK 247
P+ + + + D E++K
Sbjct: 153 TQPSVSGGNGSTSQSPPSLDVEQNK 177
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 119 RKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETP 268
+K + +T K + E P+ +Q +K+ + SKKE V P
Sbjct: 46 QKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVP 95
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPT 193
+T+ Q+ LG+T++Q T +GD V ++ST + + ++ P + T
Sbjct: 406 NTSSQAGLGLTSQQPTAAKSSGSNGDAFGSLWSSAVNKVHQENSTRERVVSSSSEPVSKT 465
Query: 194 Q 196
Q
Sbjct: 466 Q 466
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +2
Query: 77 SLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEA 256
SLS T L K R T SS L TNPT + ++ V E +
Sbjct: 451 SLSSATTLQQLPKARVTPNVLSSLSSNL-----GKTNPTSVYQSKANVTTSADVEKPQVK 505
Query: 257 VETPINVGKDVKA 295
V T V D+K+
Sbjct: 506 VATSSRVDYDLKS 518
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +3
Query: 333 LQLLYRAKPIYSLMSINKKLLKGIRKKNDTDELKPVIPNSFVYEQF 470
++ YR + + S + ++ ++ K +T E+K + PN+ ++F
Sbjct: 146 MKAAYRIRKTFLSFSKMMEHVRDVQHKKETGEIKSLSPNATFIDEF 191
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 324 SPHLQLLYRAKPIY-SLMS--INKKLLKGIRKKNDTDELKPVIPNSFVYE 464
S + Q++ +Y S+M + KKL ++ DT E+KPV P V E
Sbjct: 1108 SQYTQMITVPDTVYESIMKGILMKKLRSDLKVFVDTPEIKPVQPTEVVLE 1157
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 62 QNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQS 214
Q++PV D + + R + ++ S + G+D++ P T I+ D +
Sbjct: 18 QDLPVFREADIHHNPVDVYRSYISSELSKINGVDVSLIYPALETSISKDSA 68
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 5.8
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Frame = +2
Query: 8 PISTTVQSNLGVTNKQDTQNVPVSLSGDTVQDNL---------RKTRKTVEADSSTLKGL 160
P + T Q+ L +KQ N V S T +D + ++ ++T A + +
Sbjct: 335 PYARTRQNLLSSPSKQTPVNNVVDASVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQRV 394
Query: 161 DITTEAPTNPTQIANDQSTVKAYDAEESKKE 253
+ T PTQ+ Q+ A E+S+K+
Sbjct: 395 EQPAPQTTQPTQVDTQQAAKPAPSKEKSRKK 425
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 448 FGITGFSSSVSFFFR 404
F I GFS SVSFF R
Sbjct: 46 FMIAGFSKSVSFFLR 60
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 199 C*RSKYSESLRCRRKQKGSS*NTNQRW*RCESSCRSIDYVNNHLIYSY 342
C + SESL K+K S+ +TNQ + E + D + N L SY
Sbjct: 615 CLQDDISESLMQNSKRKDSALDTNQLF---ELELKKFDPLRNRLHASY 659
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 7.7
Identities = 16/76 (21%), Positives = 34/76 (44%)
Frame = +2
Query: 56 DTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDA 235
+T+N V + +Q+ L TRK + + + + E +N +N+ + + Y
Sbjct: 593 ETENEEVLQKYENLQEELSSTRKLLTKNEAAV------AEQQSNEEMHSNEPNILNLYSV 646
Query: 236 EESKKEAVETPINVGK 283
E K ++++ N K
Sbjct: 647 FEGKVDSLQELYNAFK 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,410
Number of Sequences: 5004
Number of extensions: 30139
Number of successful extensions: 128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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