Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A04
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 33 0.15
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 32 0.27
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 31 0.62
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 1.4
12_01_0993 - 10069179-10070057,10070708-10071049 27 7.6
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 27 7.6
04_04_1346 + 32798825-32798900,32799027-32799070,32799163-327992... 27 7.6
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453... 27 7.6
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 32.7 bits (71), Expect = 0.15
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 86 GDTVQDNLRKTRKTVE--ADSSTLKGL-DITTEAPTNPTQIANDQSTVKAYDAEESKKEA 256
GD D K T E A+ ST K + D T EAP T+ AND A E KK A
Sbjct: 1097 GDKAVDETTKGETTAEVYAEESTEKTVEDTTVEAPDEKTKTAND-PVEDATVEEPDKKTA 1155
Query: 257 VETPI 271
P+
Sbjct: 1156 ANDPV 1160
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 31.9 bits (69), Expect = 0.27
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 VPVSLSGD-TVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEES 244
VPV L T D+ +T + SS+ D T APT P Q +DQ V + EE
Sbjct: 263 VPVDLEAQFTESDSSERTHLNANSTSSSD---DTATTAPTTPRQCTDDQDVVNHGEEEEE 319
Query: 245 K 247
+
Sbjct: 320 E 320
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 30.7 bits (66), Expect = 0.62
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 35 LGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLD--ITTEAPTNPTQIAND 208
LG + V S + DT + +K +K +A + KG +T++ P T + +D
Sbjct: 1125 LGGSEPTVATEVKASDTQDTKKSEKKKKQKKKQAGADVAKGATKTVTSQQPRQETLVGSD 1184
Query: 209 QSTVKAYDAEESKKEAV-ETPINVGKDVKA 295
Q K +D ++ +E +PI V K+
Sbjct: 1185 QGGAK-HDLQDDAEELFWGSPIQVESSSKS 1213
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 271 DWCFNCFLFAFFCIVSFHCTLIVSNLSRICRSLS 170
DWC FC +S HC+ S++CRS+S
Sbjct: 2407 DWCTRHGALLTFCSISMHCS------SKLCRSMS 2434
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 208 SKYSESLRCRRKQKGSS*NTNQRW*RC--ESSCRSIDYVNNHLIYSYFTERSQY 363
S+ E R +Q G + + +R RC S DY+NN+ + +Y+T Y
Sbjct: 121 SEQVEHFRAAVRQMGPNAGSPERLGRCIFYVGMGSNDYLNNYFMPNYYTTAQSY 174
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 200 ANDQSTVKAYDAEESKKEAVETPINVGKDVKAVVEA 307
ANDQS A+D E S ++V + D KA+V A
Sbjct: 629 ANDQSLASAHDEERSPDQSVAI---ISDDHKAIVSA 661
>04_04_1346 +
32798825-32798900,32799027-32799070,32799163-32799256,
32799914-32799981,32800105-32800275
Length = 150
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 23 VQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSST 148
VQ+ G KQ QN + SGD Q + E SST
Sbjct: 79 VQAEAGAAAKQQQQNQSLERSGDANQQEQETAPRQQEKTSST 120
>01_05_0011 +
17133501-17133738,17135335-17135607,17145224-17145348,
17145463-17145612,17145653-17145696,17145822-17146174,
17146280-17146602,17147010-17147105
Length = 533
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 448 FGITGFSSSVSFFFRIPFSNFLFXDIRL 365
FG+ G +SS+SFFF + S L RL
Sbjct: 122 FGLEGEASSISFFFNLYMSLVLIFPKRL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,667,664
Number of Sequences: 37544
Number of extensions: 157439
Number of successful extensions: 444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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