Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A04
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 34 0.059
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 33 0.14
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 33 0.14
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 31 0.42
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 30 0.73
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 29 1.3
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 29 1.3
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 29 1.3
Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like pro... 29 1.7
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 29 2.2
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 29 2.2
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical ... 29 2.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 3.9
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 5.1
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 27 5.1
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 27 5.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 6.8
AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear recep... 27 6.8
AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormo... 27 6.8
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 27 6.8
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 27 6.8
Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 27 9.0
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 27 9.0
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 27 9.0
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 27 9.0
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 33.9 bits (74), Expect = 0.059
Identities = 26/136 (19%), Positives = 52/136 (38%)
Frame = +2
Query: 47 NKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKA 226
++Q ++ + T + + T S + +ITTEAPT ++ ++T++A
Sbjct: 228 SQQSVESTTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITTEAPTTTEEVTTTETTIEA 287
Query: 227 YDAEESKKEAVETPINVGKDVKAVVEAXXXXXXXXXXVTLPSEANIQSDVXKQEVTKRDP 406
+++ + T A +EA + V ++VT R P
Sbjct: 288 QTTTTTERMSPST-TKTSTTTTAKPTTTRSTTTQRPQTVATTEAPTTTTV--EDVTTRAP 344
Query: 407 KEK*HRRTEARYSEFI 454
+ + RR + S I
Sbjct: 345 RTECERRRASASSSSI 360
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 164 ITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKD-VKAVVEAXXXXXXXXXXV 340
+ T +PT + N + K EE +K+AV T VGK+ +V + +
Sbjct: 384 VLTPSPTKKAYVQNPEERTKMVHDEEKRKKAVRTLSFVGKEGGTSVNDLNVMQRQVFLQL 443
Query: 341 TLPSEANIQSDVXKQEVTKRDPKEK*HRRTEA 436
+E N +++ Q +++ +K H E+
Sbjct: 444 RREAEINTKAEESAQGTKEQESSQKKHAEEES 475
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 164 ITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKD-VKAVVEAXXXXXXXXXXV 340
+ T +PT + N + K EE +K+AV T VGK+ +V + +
Sbjct: 384 VLTPSPTKKAYVQNPEERTKMVHDEEKRKKAVRTLSFVGKEGGTSVNDLNVMQRQVFLQL 443
Query: 341 TLPSEANIQSDVXKQEVTKRDPKEK*HRRTEA 436
+E N +++ Q +++ +K H E+
Sbjct: 444 RREAEINTKAEESAQGTKEQESSQKKHAEEES 475
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 31.1 bits (67), Expect = 0.42
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 5 IPISTTVQ--SNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEA 178
+P++TT + S++ T Q + VP + S T T E +++ +TT+
Sbjct: 364 LPLTTTTEVISDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQK 423
Query: 179 PTNPTQIANDQSTVKAYDAEESKKEAVETP 268
PT T +T+ + A + K TP
Sbjct: 424 PTTVT----STTTLPSTTASTTTKTTTSTP 449
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 30.3 bits (65), Expect = 0.73
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Frame = +2
Query: 47 NKQDTQ-NVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVK 223
NK++T+ N P SL V + +K ++DS + ITT PT PT++ +
Sbjct: 375 NKENTKPNSPYSLRKRAVDSS----KKPGKSDSPAVSSPSITTPVPTRPTRLRKSAGKPE 430
Query: 224 AYDAEESKKEAVETP-INVGKDVKAVVEAXXXXXXXXXXVTLPSEANIQSDVXKQEVTKR 400
E+ + +A + K+ K + + ++ +Q K E K
Sbjct: 431 DNGTEKCQNKAPYCKHCELLKEEKKKAKLEAKNIPSTSGTPVVAQTVVQKPAKKSE--KV 488
Query: 401 DPKEK*HRRTE 433
PK + RR+E
Sbjct: 489 TPKCQSKRRSE 499
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 101 DNLRKTRKT-VEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINV 277
D K K V+A ++T K + T A PT+ ++ + Y +E ++ +TP ++
Sbjct: 466 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDDEQVKKTP-DM 524
Query: 278 GKDVKAV 298
K VK V
Sbjct: 525 KKKVKVV 531
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 101 DNLRKTRKT-VEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINV 277
D K K V+A ++T K + T A PT+ ++ + Y +E ++ +TP ++
Sbjct: 466 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDDEQVKKTP-DM 524
Query: 278 GKDVKAV 298
K VK V
Sbjct: 525 KKKVKVV 531
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 101 DNLRKTRKT-VEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINV 277
D K K V+A ++T K + T A PT+ ++ + Y +E ++ +TP ++
Sbjct: 460 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDDEQVKKTP-DM 518
Query: 278 GKDVKAV 298
K VK V
Sbjct: 519 KKKVKVV 525
>Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical
protein C44H4.5 protein.
Length = 386
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 149 LKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKDVK 292
+KGL I E NPT+ D ++ E+ K A P+ DV+
Sbjct: 193 IKGLGINPETVLNPTRAIGDLQRTHLFEETEAFKNAKGPPVISTPDVQ 240
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 336 QLLYRAKPIYSLMSINKKLLKGIRKKNDTDEL-KPVIPNS 452
Q+L+R +P + KL++ + ND D+L +P P+S
Sbjct: 772 QILFRVEPFHERNKSINKLMETLAMANDDDQLIRPTFPSS 811
>AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like
protein TAP-1 protein.
Length = 386
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 149 LKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKDVK 292
+KGL I E NPT+ D ++ E+ K A P+ DV+
Sbjct: 193 IKGLGINPETVLNPTRAIGDLQRTHLFEETEAFKNAKGPPVISTPDVQ 240
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPT 193
+ T S + V N Q N+ V +G V + T+ + S+ + I P PT
Sbjct: 110 AATTASGITVNNNQLNVNI-VQGNGTIVPQPI--TQNIISTVSNVQSSVPINNSQPLTPT 166
Query: 194 QIANDQSTVKAYDAEESKKEAVETPIN 274
+A ++ + A S + TP N
Sbjct: 167 GLAGCSTSSGSSSASSSSANSTSTPKN 193
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPT 193
+ T S + V N Q N+ V +G V + T+ + S+ + I P PT
Sbjct: 182 AATTASGITVNNNQLNVNI-VQGNGTIVPQPI--TQNIISTVSNVQSSVPINNSQPLTPT 238
Query: 194 QIANDQSTVKAYDAEESKKEAVETPIN 274
+A ++ + A S + TP N
Sbjct: 239 GLAGCSTSSGSSSASSSSANSTSTPKN 265
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPT 193
+ T S + V N Q N+ V +G V + T+ + S+ + I P PT
Sbjct: 110 AATTASGITVNNNQLNVNI-VQGNGTIVPQPI--TQNIISTVSNVQSSVPINNSQPLTPT 166
Query: 194 QIANDQSTVKAYDAEESKKEAVETPIN 274
+A ++ + A S + TP N
Sbjct: 167 GLAGCSTSSGSSSASSSSANSTSTPKN 193
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEA-PT-N 187
+TT + L T + S++ + Q +T + ++T +A PT N
Sbjct: 567 TTTKPTTLSTTTTTQVPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQATPTRN 626
Query: 188 PTQIANDQSTVKAYDAEESKKEAVETPIN 274
P + S + A+ S ++AV PIN
Sbjct: 627 PLPLLQTMSAITAFPTLLSMEKAVTLPIN 655
>AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical
protein W05F2.3 protein.
Length = 222
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 83 SGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKA 226
+ T +D L +TR ++AD +L+G + +A ++N+ S K+
Sbjct: 108 TNQTTEDLLTRTRNELQADIDSLRGHIVYLQADVRDWILSNENSQFKS 155
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 5 IPISTTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTV--EADSSTLKGLDITTEA 178
+ STT S T + + P S + +V T+ + + S+T K T+
Sbjct: 489 VTTSTTAPST-STTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTKSETTTSSD 547
Query: 179 PTNPTQIANDQSTVKAYDA 235
TNP +++T YD+
Sbjct: 548 GTNPDFYFVEKATTTFYDS 566
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 5 IPISTTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTV--EADSSTLKGLDITTEA 178
+ STT S T + + P S + +V T+ + + S+T K T+
Sbjct: 489 VTTSTTAPST-STTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTKSETTTSSD 547
Query: 179 PTNPTQIANDQSTVKAYDA 235
TNP +++T YD+
Sbjct: 548 GTNPDFYFVEKATTTFYDS 566
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 11 ISTTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNP 190
I++ +++N T + T +V S+S +D T E+ ++ + + TTE PT
Sbjct: 202 IASPMETN--TTTEATTTSVEPSVSTLASEDETTVTA-IAESTTTVIAEVSTTTEEPTTT 258
Query: 191 TQIANDQSTVKA 226
+ +ST KA
Sbjct: 259 AESTTKKSTTKA 270
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 50 KQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITT 172
K TQ + L +Q N+ KTRK + +STL D+TT
Sbjct: 142 KITTQYMGGILENAVIQKNVHKTRKLISMTTSTLD--DVTT 180
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 50 KQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITT 172
K TQ + L +Q N+ KTRK + +STL D+TT
Sbjct: 142 KITTQYMGGILENAVIQKNVHKTRKLISMTTSTLD--DVTT 180
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/85 (20%), Positives = 27/85 (31%)
Frame = +2
Query: 14 STTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPT 193
+TT + T T P + + +T T +T ++T T T PT
Sbjct: 228 TTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPT 287
Query: 194 QIANDQSTVKAYDAEESKKEAVETP 268
T K+ + TP
Sbjct: 288 TTTTTAKTTKSTTTTTKTTKTTSTP 312
>AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear receptor
NHR-106 protein.
Length = 382
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 101 DNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVG 280
+N KTR ++ + +GL+I + P I A E S E+ + G
Sbjct: 100 NNYDKTRNYIDVSNLITRGLEILKQGFPTPLGIGKTNLERMASGVEFSTAESKIVDVVTG 159
Query: 281 KDVKAVVE 304
K V V E
Sbjct: 160 KSVSMVWE 167
>AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 106 protein.
Length = 382
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 101 DNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVG 280
+N KTR ++ + +GL+I + P I A E S E+ + G
Sbjct: 100 NNYDKTRNYIDVSNLITRGLEILKQGFPTPLGIGKTNLERMASGVEFSTAESKIVDVVTG 159
Query: 281 KDVKAVVE 304
K V V E
Sbjct: 160 KSVSMVWE 167
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 161 DITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKDVKAVVEA 307
DIT+ T Q + T++ E V TPI +G ++ VV+A
Sbjct: 378 DITSVLKTTQEQQIEPEVTLEIQRGEGPFAPPVTTPIKIGDNISLVVKA 426
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 161 DITTEAPTNPTQIANDQSTVKAYDAEESKKEAVETPINVGKDVKAVVEA 307
DIT+ T Q + T++ E V TPI +G ++ VV+A
Sbjct: 380 DITSVLKTTQEQQIEPEVTLEIQRGEGPFAPPVTTPIKIGDNISLVVKA 428
>Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical
protein F35C5.3 protein.
Length = 394
Score = 26.6 bits (56), Expect = 9.0
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
Frame = +2
Query: 17 TTVQSNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSS----TLKGLDITTEAPT 184
TTV + V + + +Q VS Q+N TV D++ T D T T
Sbjct: 100 TTVGQDTTVRSGE-SQETTVSQGTTVSQENTVSQETTVSQDTTVSQETTVSQDTTVSQDT 158
Query: 185 NPTQIAN-DQSTVKAYDAEESKKEAVETPINVGKDVKAVVEAX-XXXXXXXXXVTLPSEA 358
+Q + Q T + D S++ +V NV D E+ TL E
Sbjct: 159 TVSQESTVSQETTVSQDTTVSQETSVSHETNVSPDTTVSQESTVSQDTTVSQETTLSQET 218
Query: 359 NIQSDVXKQEVT 394
+ + + T
Sbjct: 219 TVSQETTVSQDT 230
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +2
Query: 29 SNLGVTNKQDTQNVPVSLSGDTVQDNLRKTRKTVEADSSTLKGLDITTEAPTNPTQIAND 208
S++ T Q + VP + S T T E +++ +TT+ PT T
Sbjct: 334 SDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVT----S 389
Query: 209 QSTVKAYDAEESKKEAVETP 268
+T+ + A + K TP
Sbjct: 390 TTTLPSTTASTTTKTTTSTP 409
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 310 RCFYNCFHIFTN--VDWCFNCFLFAFFCIVS 224
RC NCFH+ T + C + + FF I S
Sbjct: 39 RCLCNCFHVKTGAFIIGCVHVLMILFFLIHS 69
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 131 EADSSTLKGLDITTEAPTNPTQIANDQSTVK 223
EA S KG+ I T+ PT + I N + T++
Sbjct: 100 EAHSLAFKGIPIETKGPTPSSTIMNPEVTLR 130
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 310 RCFYNCFHIFTN--VDWCFNCFLFAFFCIVS 224
RC NCFH+ T + C + + FF I S
Sbjct: 39 RCLCNCFHVKTGAFIIGCVHVLMILFFLIHS 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,149,298
Number of Sequences: 27780
Number of extensions: 168388
Number of successful extensions: 695
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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