Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_A01
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0055 + 14122821-14123073,14123181-14123402,14124613-141246... 33 0.041
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 27 1.5
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 2.0
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 27 2.0
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 27 2.7
05_03_0458 + 14280953-14281866,14281964-14282912 26 3.6
03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675... 26 4.7
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 25 6.3
05_07_0072 + 27490881-27490949,27491756-27491837,27492758-274928... 25 6.3
03_05_0128 - 21076504-21076974,21077075-21077311,21077558-210776... 25 6.3
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 25 8.3
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 25 8.3
08_02_0657 - 19749835-19751942,19753123-19753561 25 8.3
07_03_0545 + 19316474-19316712,19316918-19317017,19317135-19317233 25 8.3
03_02_0215 + 6505231-6505554,6506786-6507682 25 8.3
>03_03_0055 +
14122821-14123073,14123181-14123402,14124613-14124650,
14125117-14125231,14125357-14125508,14125626-14125899,
14126021-14126244
Length = 425
Score = 32.7 bits (71), Expect = 0.041
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 226 ISLSTNKVYIQLTIKYFLRFKLTVWATFTSRH 131
I LS N Y+ + IK+F+R ++T W F +H
Sbjct: 177 IKLSENAPYMFIVIKWFIRNQITDWLVFERKH 208
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 21 RIMCSVLTVLLVDVVCYWRGICQGF 95
+I VL +LL+ V+ W +CQGF
Sbjct: 244 KIKLVVLGILLLLVIIVWVSVCQGF 268
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 114 TTEFTSEIPGKYLANSTPRPPEEQLIPST 28
TT TSEIPGK ++ PR ++ P++
Sbjct: 1972 TTNKTSEIPGKSADSTEPRRSNRRIQPTS 2000
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 75 ANSTPRPPEEQLIPS 31
AN+TP+P +EQ+IPS
Sbjct: 819 ANATPQPAKEQVIPS 833
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 115 HDRIHLRNPWQIPRQ*HTTSTR 50
H R H R PW + R+ H+TS+R
Sbjct: 296 HPRRH-RRPWSLQRRRHSTSSR 316
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 137 QTLYRFRSRPNSPPKSLANTSPIAHHVHQK 48
QT RF S + PP + + SP+AH + +K
Sbjct: 127 QTPTRFLSSSSPPPDAPRHLSPVAHALLEK 156
>03_06_0747 -
35967119-35967185,35967325-35967422,35967533-35967574,
35967734-35967782,35967971-35968047,35968306-35968362,
35968511-35968611,35968698-35969106
Length = 299
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 223 SLSTNKVYIQLTIKYFLRFKLTVWAT 146
SL + KVY LT+ Y F L V AT
Sbjct: 184 SLRSRKVYSDLTVDYLKMFLLNVPAT 209
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 143 HVQTLYRFRSRPNSPPKSLANTSPIA 66
H+Q RFR RP P + +TS A
Sbjct: 69 HLQPCLRFRLRPRQPAATYTSTSASA 94
>05_07_0072 +
27490881-27490949,27491756-27491837,27492758-27492821,
27492992-27493055,27493295-27493357,27493458-27493558,
27493663-27493729,27493821-27493892,27493997-27494158,
27494791-27494864,27494943-27495040,27495471-27495578,
27495746-27495813,27495907-27496044,27496150-27496197,
27496433-27496645
Length = 496
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 26 YVLGINCSSGGRGVLLARYLPGISEVNSVVNGIDIMSGREGSPDCQL 166
Y L +NC + G + A L GI + + GI+I+ G QL
Sbjct: 138 YPLLMNCLTEGDEEISAISLDGIKRLAQIPKGIEIIFPPNGQGSVQL 184
>03_05_0128 -
21076504-21076974,21077075-21077311,21077558-21077682,
21082636-21082885
Length = 360
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 23 NYVLGINCSSGGRGV 67
NYV G+N +SGG GV
Sbjct: 105 NYVNGVNFASGGAGV 119
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 71 LARYLPGISEVNSVVNGIDIMSGREGSPD 157
+A + PGI SV++G ++MS G D
Sbjct: 438 IAAFRPGIDHSWSVISGDEVMSTTGGDDD 466
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 8 IKINENYVLGINCSSGGRGVLLAR 79
+ + N G CS GGRG LL R
Sbjct: 397 VSVGRNESGGDGCSQGGRGKLLHR 420
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 68 LLARYLPGISEVNSVV-NGIDIMSGREGSPDCQLK 169
LLAR + S + VV NG +IMSG G + L+
Sbjct: 264 LLARAIAAESGAHFVVVNGPEIMSGMPGESEANLR 298
>07_03_0545 + 19316474-19316712,19316918-19317017,19317135-19317233
Length = 145
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 41 NCSSGGRGVLLARYLPGISEVNSVVNGIDIMSGREGS 151
N SS G GVLLARY S++ V D R GS
Sbjct: 49 NASSTGSGVLLARYDALQSDMCMVTR--DARKARRGS 83
>03_02_0215 + 6505231-6505554,6506786-6507682
Length = 406
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 50 SGGRGVLLARYLPGISEVNSVVNGID 127
+ GRG + YLP + E + VN ++
Sbjct: 274 TSGRGAHIVEYLPPVPETSGQVNPVE 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,402
Number of Sequences: 37544
Number of extensions: 107185
Number of successful extensions: 366
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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