Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_A01
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   1.4  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    25   5.5  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    25   7.3  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 123 IPFTTEFTSEIPGKYLANSTPRP 55
           IP TT+ +S  P  Y +N TP P
Sbjct: 366 IPSTTQTSSSAPSTYTSNFTPSP 388


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 58  TWCAIGEV-FARDFGGEFGRERNRYNVWT*R*PR 156
           TW  IG V + RDFG E G +  +++ WT + PR
Sbjct: 696 TW--IGYVKYDRDFGWEDGNKGLQFDPWTEKMPR 727


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 TLYRFRSRPNSPPKSLANTSPIAHHVHQK 48
           TLY F+    S  + + N    +HH+HQ+
Sbjct: 97  TLYSFQDNLGSIGQDMKNLQLQSHHIHQE 125


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 171  LKKYFIVNCMYTLFVLNEIINKI 239
            L KYF +   Y +F+LN+ +++I
Sbjct: 1653 LLKYFSIFLFYFIFLLNDFLSRI 1675


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 113 RPNSPPKSLANTSPIAHHVHQKN 45
           R   PPK L NT+P   H  + N
Sbjct: 13  RVRDPPKQLTNTNPSKRHRERLN 35


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 113 RPNSPPKSLANTSPIAHHVHQKN 45
           R   PPK L NT+P   H  + N
Sbjct: 13  RVRDPPKQLTNTNPSKRHRERLN 35


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 132 IISIPFTTEFTSEIP-GKYLANSTPRPPEEQLIP 34
           +++IP TT  T E+P  + L  + P P EE   P
Sbjct: 301 LVTIPPTTSTTEELPVEQELPVTEPIPDEETTFP 334


>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 136 RHYIDSVHDRIHLRNPWQIPRQ*HTTSTRRTVNTEHII 23
           +HY    H  I    P  + R+   T+ R  V+ EH +
Sbjct: 402 QHYHHDHHQEIEASIPLSLSRRTRKTARRHLVSKEHFL 439


>AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical
           protein K09H9.1 protein.
          Length = 374

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -3

Query: 212 K*SIHTINNKIFLKV*VDSLGYLHVQTLYRFRSRPNSPPKSL 87
           K S ++I+N + L+V +D LG+  +  + RF   P++ P+S+
Sbjct: 139 KTSKNSISN-LDLRVQLDCLGFGAISPIARFDVLPSTQPQSM 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,571,108
Number of Sequences: 27780
Number of extensions: 100914
Number of successful extensions: 333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)