Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P24
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   0.78 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   4.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 FVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMN 246
           ++ IKK   + F P  VK +F N+ D   +    MN
Sbjct: 173 YLRIKKHAVK-FNPAKVKLRFENLFDGNKELGEQMN 207


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 302 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 339


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  YQRSRFCETRRRSSKHRQR 116
           +QR+  C +R   S+H  R
Sbjct: 224 FQRTSSCHSRYEDSRHEDR 242


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 251 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 138
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 302 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,257
Number of Sequences: 438
Number of extensions: 1355
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)