Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P23
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    61   4e-11
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   0.56 
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    27   0.56 
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   0.97 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   3.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    24   3.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   5.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   5.2  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    23   6.9  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    23   9.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    23   9.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    23   9.1  

>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 60.9 bits (141), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   EALGSIATEDCIEILKRYLNDSRRVVRESCEVALDMSEYENSPEFQYA 146
           EALG IA ++C+ +LK++  D  RVV ESC VALDM EYE S + +YA
Sbjct: 264 EALGGIANDECLPVLKKFSKDDVRVVAESCIVALDMIEYEKSGDMEYA 311



 Score = 31.1 bits (67), Expect = 0.034
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   EALGSIATEDCIEILKRYLN-DSRRVVRESCEVALDMSEYEN 125
           EALG++   + + +L++Y   D    +RE+CE+A+   +++N
Sbjct: 102 EALGALGFTESLPVLEKYYKEDPLAPIRETCELAIARIQWKN 143


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 198  YFRLIRELINFRQLIKYSHIETQGCFHIQTYPEPPHNSPG 79
            Y++LI    +F QLI+  HI+ Q  F++  Y    H+  G
Sbjct: 892  YYKLIP---SFEQLIQDFHIQPQVAFYLSRYKNLDHSLTG 928


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 123 FHIQTYPEPPHNSPGRHAVSHSS 55
           FH++  P P   SPG+ + S SS
Sbjct: 160 FHVKFSPNPTQTSPGKPSTSESS 182


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  GRVVRWL-WICLNMKTALSFNMRILY 156
           G V+ W  W+C N  T L+ N+R  Y
Sbjct: 276 GVVLIWFAWLCFNSGTLLTVNIRTAY 301


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 ISSRINRKY*ST*CIIMYPLLEYLSFSYWYMTVYS 277
           ISS    K+ S      YPLLE+L+F+  Y++ ++
Sbjct: 577 ISSLQGVKFRSKLMAYFYPLLEHLAFASPYVSSFA 611


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 128 P*VSICEYFINCRKLISSRINRKY 199
           P  S+CE +I+  +L+S  + R+Y
Sbjct: 792 PKCSVCEEYIDTERLLSYALFRRY 815


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 112  LNMKTALSFNMRILY*LSKVNKFTY*PEILKHLVYYYVS 228
            LN+ TA+  NM  LY  +K N F    + L+ L  +Y+S
Sbjct: 1464 LNLLTAVFCNMAKLYADAKTNGFAS-SQYLQSLFIHYLS 1501


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   EALGSIATEDCIEILKRYLNDSRRVVRESCEVAL 104
           EALGS  +   +++LK  LN++  +     EV+L
Sbjct: 787 EALGSDNSRPSLKVLKTLLNEAETICCPLQEVSL 820


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 156 IKYSHIETQGCFHIQTYPEPPHNSPGRHAVSHSSTF 49
           I YS      C++I +Y   PH+S   + V   STF
Sbjct: 457 ILYSFYALLCCYYIYSYKLIPHSSIFVYTVPIISTF 492


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 30  DCIEILKRYLNDSRRVVRESCEVALDMSEYENS 128
           DC+ +L+ +  D + V     E  L    Y+NS
Sbjct: 414 DCLAVLQEHTQDVKVVTWHPTEDLLVSGSYDNS 446


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 190 PEILKHLVYYYVSF 231
           PE L+ L+YYY  F
Sbjct: 704 PEELQRLIYYYFEF 717


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 165 RQLIK-YSHIETQGCFHIQTYPE 100
           RQ+ K  +HI T G FH    PE
Sbjct: 143 RQIFKGLNHIHTNGFFHRDMKPE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,986
Number of Sequences: 5004
Number of extensions: 21661
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)