Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P23
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939...    48   1e-06
12_01_0405 - 3207977-3208018,3208097-3208215,3208303-3208429,320...    48   1e-06
10_06_0042 - 10015657-10017840                                         27   1.9  
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335...    27   3.3  
11_06_0577 - 25158833-25162864                                         26   4.4  
04_03_0910 + 20751014-20753437                                         26   4.4  
04_03_0913 + 20777859-20780309                                         25   7.7  
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    25   7.7  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    25   7.7  

>12_02_1187 -
           26793455-26793496,26793599-26793717,26793813-26793939,
           26794382-26794520,26794565-26794833,26794923-26795056,
           26795630-26795750
          Length = 316

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +3

Query: 3   EALGSIATEDCIEILKRYLNDSRRVVRESCEVALDMSEYENS 128
           EALGSIA ++ I +L+ +  D   +V +SCEVAL M EYE S
Sbjct: 257 EALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERS 298


>12_01_0405 -
           3207977-3208018,3208097-3208215,3208303-3208429,
           3208776-3208914,3209001-3209227,3209389-3209522,
           3209659-3209779
          Length = 302

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +3

Query: 3   EALGSIATEDCIEILKRYLNDSRRVVRESCEVALDMSEYENS 128
           EALGSIA ++ I +L+ +  D   +V +SCEVAL M EYE S
Sbjct: 243 EALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERS 284


>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 189 LIRELIN--FRQLIKYSHIETQGCFHIQTYPEPPHNSPGRHAVSHSSTFSEFLYSL 28
           ++RE +   F + +   H+ T  C H +   E P N   +  +S S T SE++  L
Sbjct: 515 VVRESVRREFDECLLLWHVATDLCSHRRREMEVPRNGDIQSLMSISETLSEYMLYL 570


>03_02_0691 +
           10432615-10433109,10433155-10433216,10433526-10433565,
           10434562-10434807,10435020-10435189,10435323-10435539,
           10435615-10435755,10435943-10436026
          Length = 484

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 39  EILKRYLNDSRRVVRESCEVALDMS 113
           E++++YL D  ++VRE   VA D+S
Sbjct: 298 ELIQKYLGDGPKLVRELFRVADDLS 322


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 114  QTYPEPPHNSPGRHAVSHSSTFS 46
            Q YP P +NS G +   H  T S
Sbjct: 949  QVYPSPRYNSTGMYLKRHEETIS 971


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 160 VNKVFAY*NSGLFSYSDISRATSQLSRTTRRESFKYLFRISIQSSVAI 17
           +N ++A      F YSD+ RAT   S       F  +F+  +  S AI
Sbjct: 484 LNSIYAGTGVIPFRYSDLQRATKNFSEQIGAGGFGSVFKGLLNGSTAI 531


>04_03_0913 + 20777859-20780309
          Length = 816

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 124 FSYSDISRATSQLSRTTRRESFKYLFRISIQSSVAI 17
           F Y D+ RAT+         SF  +FR S+  S  I
Sbjct: 493 FEYIDLQRATTNFMERLGGGSFGSVFRGSLSDSTTI 528


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 27  EDCIEILKRYLNDSRRVVRESCEVALDMSEYENSPE 134
           EDC++++   L D  ++VR +   AL        PE
Sbjct: 378 EDCLKVVLEALKDQEQMVRGAASFALGQFAEHLQPE 413


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 171 NFRQLIKYSHIETQGCFHIQTYPEPPHN 88
           +F  L+K S +   GC  ++  PE  HN
Sbjct: 818 SFGNLLKLSLLSLSGCTKLEELPESIHN 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,087,869
Number of Sequences: 37544
Number of extensions: 121471
Number of successful extensions: 287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)