Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_P22
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 2.1
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 3.7
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 25 4.9
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 4.9
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 6.4
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 24 6.4
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.4
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 24 6.4
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 24 8.5
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 24 8.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 8.5
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo... 24 8.5
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 51 TKSSSVQQYVNPSLGIN 1
T+ ++ YVNPSLG+N
Sbjct: 657 TEMLNISSYVNPSLGVN 673
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 3.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 155 RISRFMIKHSQNLIQKNTNH 214
+ +F++ HS+ I KN NH
Sbjct: 181 KFKKFVVNHSETDIDKNDNH 200
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 148 SVNAIFFGTHPSRKAGYYCIRKETCSLVIEGVYKIIKCAAI 26
+VN ++ P K C+ +T L +GV I+C A+
Sbjct: 121 AVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECIAL 161
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 252 NTYSYFLRKNTSIVFTLRLYALFRVMRGI 338
N+ S F+R++ + V+T+ A+F + G+
Sbjct: 20 NSVSAFVRRHRTFVYTIGAVAVFATVGGV 48
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 64 LPKSTFLYEYSNTPLYARDAYRKKSR 141
LPK TF+YEY + +RK+ R
Sbjct: 200 LPKDTFVYEYIG-EVIPEQKFRKRMR 224
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -3
Query: 147 QLTRFFSVRIPRVKRGITVFVKKRALW*SKAFTKSSSVQQYVNPSL 10
+L + ++R+P + VK + + + + K + VQQY + S+
Sbjct: 187 ELPQLIALRVPYLDPSFEALVKIQLRFCREGYEKMAQVQQYFDNSV 232
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 139 AIFFGTHPSRKAGYYCIRKETCSLVIEGVYKIIKCAAICESIFRYQ 2
++F GTH + + ++ + + ++GV I K SIF+ Q
Sbjct: 2 SLFIGTHNIKNSAIQLLKTKLKNEFLKGVKCITKYPENAHSIFKVQ 47
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 70 KSTFLYEYSNTPLYARD 120
KS+ YEY TP+Y+++
Sbjct: 109 KSSLSYEYDFTPIYSKE 125
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.8 bits (49), Expect = 8.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 171 INLDIREFQLTRFFSVRIPRVKRGITVFVKKRALW*SKAFTKSSSVQQYVNPSL 10
+NLD ++ L ++++ G +F RAL+ KA T S + V+ +L
Sbjct: 327 VNLDDKKESLLKYYATHPTITPDGFPIFAYVRALYAYKA-TLPSEIDLNVDDTL 379
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 248 MQYVLLFFTEKYIYCLYITFIRTLSRNARHLSA 346
+ + L FF E Y + LYI R H+ A
Sbjct: 174 LNFKLWFFNEVYRHFLYINSTRIYEDRPSHIEA 206
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 49 CKRLRLPKSTFLYE 90
C R + PK+TFL+E
Sbjct: 285 CLRFKYPKNTFLFE 298
>SPCC4B3.18 |||phosphopantothenate-cysteine
ligase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 316
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 219 LNHFNSKNTLCNTYSYFLRKNTSIVFTLRLYALFRVMR 332
+++F++ N + YF + S++F R Y+L R
Sbjct: 60 IDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTR 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,593
Number of Sequences: 5004
Number of extensions: 26351
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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