Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P22
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1794 - 29580767-29584189                                         31   0.21 
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    27   3.4  
11_04_0445 + 17818190-17818874,17819730-17819749                       26   7.9  
07_03_0998 - 23214548-23214567,23215424-23216120                       26   7.9  
06_03_0333 - 19658344-19658363,19659286-19659916                       26   7.9  

>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 184  TMFNHKPRYTRISVNAIFFGTHPSRKAGYYCI 89
            + F H P  TR+ +    FGT P +K+ + CI
Sbjct: 1098 SQFKHFPTRTRVPLRNFLFGTKPKKKSIFACI 1129


>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 208 KSFYSITLILRTLYAIRTLIFYGKIHLLSLHYVYT 312
           + F  I   +R+L  +RTL+F+G+ + + L +++T
Sbjct: 786 EKFEKIIQNIRSLQKLRTLMFFGQNNTMLLRFLHT 820


>11_04_0445 + 17818190-17818874,17819730-17819749
          Length = 234

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 79  FLYEYSNTPLYARDAYRKKSR*LKFAYIEVYD 174
           F   YS+ PLY  D +R++ R  K  ++ + +
Sbjct: 76  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVE 107


>07_03_0998 - 23214548-23214567,23215424-23216120
          Length = 238

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 79  FLYEYSNTPLYARDAYRKKSR*LKFAYIEVYD 174
           F   YS+ PLY  D +R++ R  K  ++ + +
Sbjct: 80  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVE 111


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 79  FLYEYSNTPLYARDAYRKKSR*LKFAYIEVYD 174
           F   YS+ PLY  D +R++ R  K  ++ + +
Sbjct: 80  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVE 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,812,783
Number of Sequences: 37544
Number of extensions: 125435
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)