Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P20
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   2.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.6  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   7.3  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   7.3  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   7.3  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    25   7.3  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    25   9.7  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.7  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 491 KFIIFKLISKHIFYLFLNFLLTF 423
           K++I+  +S H+FY+F +F  T+
Sbjct: 168 KYLIYLFLSIHLFYVFQSFPWTY 190


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 198  LSASLNDYADSVNS*PEPEACSNMISMPLNHTE 100
            L   L D+A  ++  PEP  C   ++ P+N  E
Sbjct: 1633 LCERLEDHAAILHGFPEPPPCDTGLAAPVNQAE 1665


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +3

Query: 66  QAIRVLNLELQL--QYGSEAWRSYLSTLQALVTSSQNLHSHLRK---QIAAVNWERKRSQ 230
           QAI++L   LQ+  ++ +  W      L+ L++S+QN    L+K   +I  + +E K+ Q
Sbjct: 786 QAIKLLQANLQVYNEFRTFPWAKLFFNLRPLLSSTQN-DKQLKKRDAEIIELKYELKKQQ 844


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 449 LFLNFLLTFRIQFVW*QFHSFHVCSLITF 363
           +++NF   + I+ +     SFHVC LI F
Sbjct: 2   IYINFYELYNIKNIRPLIPSFHVCLLIMF 30


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 24  WSESVDNSHAQLSHQAIRVLNLELQLQYG 110
           W+  V   + QL   A R L L + +QYG
Sbjct: 31  WNGDVTLRNLQLKRSAFRKLELPISVQYG 59


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 234 QFANVYVPNSPPLSASLNDYADSVNS*PEPEACSNMISMPLNH 106
           +F  +Y PN      S N+  D++ S   P    +  S+PL+H
Sbjct: 216 RFGVIYKPNPKLTPFSFNNNPDTLPSNIAPMGTLSKSSLPLHH 258


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 369 DEAADMEAVKLLPDKLNS--ESEKEVQK 446
           DEAA     KL  D++NS  ESEK V+K
Sbjct: 177 DEAAAKSDSKLNVDQINSTTESEKRVEK 204


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 336 QKAKGEMPAESDEAADMEAVKLLPDKLNSESEKEVQKKIE 455
           + A+  +P E D+  D+E    LPD L +    +++ +I+
Sbjct: 58  EPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQ 97


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
 Frame = +3

Query: 129 YLSTLQALVTSSQNLHSHLRKQIAAVNWERKRSQTGSGXXXXXXXXXWAQLVSDNYRVER 308
           YL+T +  + + Q     L+K+   V+      +   G          A +     RV+ 
Sbjct: 109 YLNTFERNILALQEKDKFLKKKHGTVSGTVMEQRANLGLAFGTRKSQKAIMEESANRVKA 168

Query: 309 AIM-----QLEIQLQKAKGEMPAESD-EAADMEAVKLLPDKLNSESEKEVQKKIEDM 461
             +     QL   +QKA   +P + D  AA  +   + P  + +ES ++   K+ED+
Sbjct: 169 ETLGDVKDQLVSNVQKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAY-KLEDI 224


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 309 AIMQLEIQLQKAKGEMPAESDEAADMEAVKLLPDKLNSESEKEVQKKIED 458
           A +  E  +QK K +  +E +  A  E  K+  D L +E  +E +KK+ D
Sbjct: 486 ATLASEQPIQKRKRKDQSEDNFGARDEDWKVYHDVLTAEQLEEERKKLLD 535


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 360 AESDEAADMEAVKLLPDKLNSESEKEVQKKIE 455
           +ESD+ ++ + ++   D+L+SES K+ QK  E
Sbjct: 546 SESDDESNGDMIRDSFDRLSSESIKDSQKTEE 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,348
Number of Sequences: 5004
Number of extensions: 35449
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)