Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_P20
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1136 + 9012069-9012317,9013547-9013722,9014342-9014425,901... 58 5e-09
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 30 1.1
04_04_0537 + 26079926-26079994,26080317-26080500,26081866-260839... 30 1.4
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 29 1.8
03_05_0955 + 29168771-29170507 29 1.8
08_01_1010 - 10215625-10216335,10216372-10216473 29 2.4
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 29 3.2
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 3.2
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 28 5.6
02_05_1279 + 35427916-35429511 28 5.6
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 5.6
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562 27 7.5
02_02_0287 - 8598298-8598313,8598566-8598618,8598964-8599073,859... 27 7.5
>01_01_1136 +
9012069-9012317,9013547-9013722,9014342-9014425,
9014757-9014826,9015644-9015652
Length = 195
Score = 58.0 bits (134), Expect = 5e-09
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +3
Query: 21 AWSESVDNSHAQLSHQAIRVLNLELQLQYGSEAWRSYLSTLQALVTSSQNLHSHLRKQIA 200
AW +++ N+ +QL HQ IR+ NLEL L+YG E W+ ++++++ Q + ++I
Sbjct: 124 AWRQALRNAQSQLHHQIIRIENLELMLKYGVEVWKLQNRQMESVLSRMQKMAVEYNEKIE 183
Query: 201 AVNWERKRSQ 230
VN ERK Q
Sbjct: 184 TVNRERKFHQ 193
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 57 LSHQAIRVLNLELQLQYGSEAWRSYLSTLQALVTSSQNLHSHLRKQIAAVNWERK 221
L +A+R+ + EL+L+ E S +S+ + V+S + HL+ + A+ E+K
Sbjct: 510 LEDKALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKK 564
>04_04_0537 +
26079926-26079994,26080317-26080500,26081866-26083910,
26084323-26084424,26084566-26084622
Length = 818
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 303 ERAIMQLEIQLQKAKGEMPAESDEAADMEAVKLLPDKLNSESEKEVQKKIED 458
E AIMQLE L+ +GEM + S D + + L D L E+ +Q ++++
Sbjct: 144 ELAIMQLEWSLRFVRGEMESGSGGGGDGDCHEQLLDDL-LETRDRIQARLDE 194
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -3
Query: 351 HPWPSVVVSLAA*WLAPLCSCPRRAAPSVCATRGAARRYQFANVYVPNSPPLSASLN 181
H WP ++ SL +A L S A S A F +VY N PPL LN
Sbjct: 47 HVWPGLLESLLHQIIALLSSFQDLLAFSATCHSWRAALSSFPSVYTFNFPPLCLKLN 103
>03_05_0955 + 29168771-29170507
Length = 578
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 216 VPNSPPLSASLNDYADSVNS*PEPEACSNMISMPLNHTEVAIRGSVHGSLD 64
VP+ PP A+ A + + P PEA ++ P T VA S D
Sbjct: 150 VPSPPPTHAAATATATAATAAPRPEAAPALLPQPAAATPVACSSPSPSSAD 200
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 288 PRRAA-PSVCATRGAARRYQFANVYVPNSPPLSASLNDYADSVNS*PEPEACSNMI-SMP 115
PRRAA P + R + Y P++PP A+ DY S + P A N S P
Sbjct: 95 PRRAASPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTPSTPTPPRRAASPNYTPSTP 154
Query: 114 LNH 106
H
Sbjct: 155 QRH 157
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 30 ESVDNSHAQLSHQAIRVLNLELQLQYGS----EAWRSYLSTLQALVTSSQNLHSHLRKQI 197
+ V+NS +Q SH+ I + N+ +QL + + S++S ++ ++ +LHS K
Sbjct: 928 KDVENSGSQSSHREITLCNVSVQLLCDTIIYDRKYSSWISCKLQVIVATYSLHSPSGKTA 987
Query: 198 AAVN 209
A N
Sbjct: 988 AIGN 991
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 279 LVSDNYRVERAIMQLEIQLQKAKGEMPAESDEAADMEAVKLLPDKLNSE 425
L S+N RV + LE+ L K EM S+ AD+E +L K N E
Sbjct: 524 LCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC-ELRSTKENME 571
>07_01_0890 -
7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 237 YQFANVYVPNSPPLSASLNDYADSVNS*PEPEACSNMISMPLNHTEVAIRGSVHG 73
Y A++ +S P++A+L +YA S + P PE + P I G +HG
Sbjct: 456 YWIASIESKSSHPMAAALVEYAQSKSIQPNPENVGDFRIYP----GEGIYGEIHG 506
>02_05_1279 + 35427916-35429511
Length = 531
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 304 STL*LSETSCAQRLRNARSRAPLP 233
STL LS + A+RLRNA R P P
Sbjct: 21 STLYLSPAATARRLRNAGFRGPTP 44
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 24 WSESVDNSHAQLSHQAIRVLNLELQLQYGSEAWRSYLSTLQALVTSSQ 167
W ES+ N QLS Q +++ N Q +E ++ L +L+A V + +
Sbjct: 410 WEESLQNDEKQLSEQKLQIENERKQ----AEMYKLELESLKATVVAEK 453
>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
Length = 285
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 327 SLAA*WLAPLC--SCPRRAAPSVCATRGAAR 241
+LA + PLC S PRRA P RGAAR
Sbjct: 7 TLALAFPLPLCAVSSPRRATPLALPRRGAAR 37
>02_02_0287 -
8598298-8598313,8598566-8598618,8598964-8599073,
8599179-8599264,8599664-8599785,8600063-8600180,
8600304-8600785
Length = 328
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 111 SEAWRSYLSTLQALVTSSQNLHSHLRKQIAAVNWERKRSQT 233
S +W + +A VTSS L H+ A + WE S+T
Sbjct: 254 SPSWSKHKLWEEAFVTSSLRLIQHVETVQAPILWENIESKT 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,437
Number of Sequences: 37544
Number of extensions: 255278
Number of successful extensions: 813
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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