Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P20
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 399 ISQLPCLQPHHFLRAFHPWPSVVVS 325
           IS  P +QP   ++ F  W S++ S
Sbjct: 431 ISWNPLMQPKQPIKLFEQWKSILES 455


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 139 RFRLWLRVHRICI 177
           RF L+  VHRICI
Sbjct: 319 RFPLFTTVHRICI 331


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 306 RAIMQLEIQLQKAKGEMPA 362
           + + QLEIQLQK +  + A
Sbjct: 321 QVVSQLEIQLQKERDRLTA 339


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 113  RGMEIIFEHASGSGYEFTESA*SFKEADSG 202
            R + + ++H S    E T+    +KE D+G
Sbjct: 922  RSINVKWQHKSQDTTEVTKYILQYKEGDAG 951


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 113  RGMEIIFEHASGSGYEFTESA*SFKEADSG 202
            R + + ++H S    E T+    +KE D+G
Sbjct: 918  RSINVKWQHKSQDTTEVTKYILQYKEGDAG 947


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,047
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)