Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P17
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.56 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   5.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   6.8  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   9.0  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.0  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 32  SPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPRLRPASGCSHYQL 193
           S S SS     S+S++ + S  S  TTS+     +SS   P + P +  SHY +
Sbjct: 151 SSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNI 204


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 157 VAPGKRVLSLSTLTVPQVL*SRVLLLGNEKTNKLSALGSVDLTNQMKLGAATAGLAYDNV 336
           +AP      L+T  + Q    R L+   + TN+L +L S+    + K   A + L  +  
Sbjct: 646 MAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKS 705

Query: 337 N 339
           N
Sbjct: 706 N 706


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 280  LTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAW 405
            +T+  +  A    LA  N+ G  + + +TH+PG G  +  ++
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSVLQSY 963


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 313 AGLAYDNVNGHGATLTNTHIPG 378
           A  A DN+   GA+L + H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 5   NLQANIRRCSPSYSSCLFSWSASTAGTC-SLKSLATTSNSMMISRSSGATPRLRP 166
           +L+ N  R S S S     W  ++ G   S KSL  T  SM +   S + P+ RP
Sbjct: 196 SLRENDIRSSDSKS---VGWDDNSTGFRESSKSLDHTDTSMFMELDSNSDPQFRP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,992
Number of Sequences: 5004
Number of extensions: 42232
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)