Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_P17
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 32 0.32
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 29 2.3
07_01_0043 + 343777-343953,345198-346716,346831-346977,347378-34... 29 2.3
05_05_0256 - 23647736-23648947 29 2.3
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 29 3.0
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 28 4.0
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 4.0
08_02_0357 + 16173705-16173870,16174483-16174538 27 6.9
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 27 9.1
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634... 27 9.1
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 214 IAPEVPSELIVRA--PACRAQPGSCPTAPADHHTVRCSSQALQRARTG 77
I+ PS+ + RA P PTAP HH++ CS RA TG
Sbjct: 19 ISSSSPSKPLSRAKTPPPALLQAILPTAPPKHHSLSCSGSQAPRATTG 66
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 14 ANIRRCSPSYSSCLFSWSASTAGTCSLKSLATTSNSM 124
A + PS S C F SAS AGT + ++ T+ +M
Sbjct: 91 ATLTTSDPSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>07_01_0043 +
343777-343953,345198-346716,346831-346977,347378-347940
Length = 801
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 429 SLWNRLTLPSGGQLVTETRDVSVCKSRSVSIDI 331
+LWNR + P LV + D+ +C S+ +S ++
Sbjct: 408 NLWNRDSTPYHKSLVIDASDLKLCDSKDISEEL 440
>05_05_0256 - 23647736-23648947
Length = 403
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 23 RRCSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRS-SGATPRLRPASGC 178
R CS SY+ + S + S + +T++S S + GATP ASGC
Sbjct: 318 RGCSKSYNVADYPGLGSAPASTSWTTTESTTSSRSSSMAPDGATPAETAASGC 370
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 14 ANIRRCSPSYSSCLFSWSASTAGTCSL 94
A + PS+S C F SAS AGT L
Sbjct: 94 ATLSSSDPSFSGCTFPSSASAAGTTGL 120
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 150 LPGCARQAGALTINSDGTSGAIVQGTITWKRKNQQ 254
+PGC++ ALT G+ GA K+K QQ
Sbjct: 213 VPGCSKCLRALTTIKAGSGGAAAAAAAAAKKKQQQ 247
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 80 GTCSLKSLATTSNSMMISRSSGATPRLRP 166
G KS TTS+ SRS+G +P LRP
Sbjct: 206 GRMDEKSSETTSSGDEASRSTGGSPELRP 234
>08_02_0357 + 16173705-16173870,16174483-16174538
Length = 73
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 175 VLSLSTLTVPQVL*SRVLLLGNEKTNKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGAT 354
+L S L L ++LL NE + L A+G VD+ ATA A + + GH +
Sbjct: 7 LLLFSVLAGGGCLAGYIVLLSNETPHWLPAVGRVDVLQAFLSVLATACTAQEFLLGHRVS 66
Query: 355 L 357
+
Sbjct: 67 I 67
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 44 SSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPRLRPASG 175
SSCL WS + CS L NS++ G++ ++ SG
Sbjct: 11 SSCLVGWSGTLNSLCSF--LLDVRNSLLREPKHGSSVQINYGSG 52
>03_02_0197 +
6337212-6337278,6339261-6340517,6340599-6340626,
6340735-6340897
Length = 504
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 14 ANIRRCSPSYSSCLFSWSASTAGTCSLK--SLATTSNS 121
A I PS+ SC+++ S GT L SLA +SNS
Sbjct: 434 AVITTTDPSHGSCVYAGSGGKNGTSLLNGTSLAPSSNS 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,171,284
Number of Sequences: 37544
Number of extensions: 313483
Number of successful extensions: 977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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