Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P15
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    28   4.8  
07_03_0216 + 15286968-15286970,15287068-15287213,15288333-152883...    27   6.3  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     27   8.4  

>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 VCYWDMTSQFTCAV*VSY*HSFYGKEIKQHQYKRLYI 239
           V  W  +  F   + VSY HS Y ++IK+ +Y  L+I
Sbjct: 134 VVIWTWSRMFLTVMDVSYLHSIY-RKIKEGRYTDLFI 169


>07_03_0216 +
           15286968-15286970,15287068-15287213,15288333-15288335,
           15288514-15288697,15289772-15289824,15290118-15290206,
           15291270-15291506,15293494-15293687,15293774-15293834,
           15293905-15294022,15294093-15294174,15295212-15295337,
           15295435-15295530,15295945-15296099,15296706-15296802,
           15296926-15297003,15297085-15297192
          Length = 609

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 162 CAV*VSY*HSFYGKEIKQHQYKRLYIRIL 248
           C++ +S  H FY K  K H++KR Y  ++
Sbjct: 398 CSICLSVAHLFYDKGGKHHRFKRGYKNVI 426


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  LITFYCHIKNITLEKKIRHFFYPRTVCYWD 143
           LIT Y    N+   K++ H F P+ +  W+
Sbjct: 374 LITMYIKCGNLDKAKRVFHTFEPKDIVMWN 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,736
Number of Sequences: 37544
Number of extensions: 150403
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)