Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P15
         (498 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02556-1|AAA57444.1|  116|Homo sapiens protein ( Human RP3 mRNA,...    30   3.9  
CR542213-1|CAG47009.1|  116|Homo sapiens TCTE1L protein.               30   3.9  
CR450320-1|CAG29316.1|  116|Homo sapiens TCTE1L protein.               30   3.9  
BC000968-1|AAH00968.1|  116|Homo sapiens dynein, light chain, Tc...    30   3.9  

>U02556-1|AAA57444.1|  116|Homo sapiens protein ( Human RP3 mRNA,
           complete cds. ).
          Length = 116

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  YCHIKNITLEKKIRHFFYPRTVCYWDMTSQFTCAV 170
           Y +I    + +K  + F+  + C+WD TS  TC V
Sbjct: 62  YKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTV 96


>CR542213-1|CAG47009.1|  116|Homo sapiens TCTE1L protein.
          Length = 116

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  YCHIKNITLEKKIRHFFYPRTVCYWDMTSQFTCAV 170
           Y +I    + +K  + F+  + C+WD TS  TC V
Sbjct: 62  YKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTV 96


>CR450320-1|CAG29316.1|  116|Homo sapiens TCTE1L protein.
          Length = 116

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  YCHIKNITLEKKIRHFFYPRTVCYWDMTSQFTCAV 170
           Y +I    + +K  + F+  + C+WD TS  TC V
Sbjct: 62  YKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTV 96


>BC000968-1|AAH00968.1|  116|Homo sapiens dynein, light chain,
           Tctex-type 3 protein.
          Length = 116

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  YCHIKNITLEKKIRHFFYPRTVCYWDMTSQFTCAV 170
           Y +I    + +K  + F+  + C+WD TS  TC V
Sbjct: 62  YKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTV 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,692,109
Number of Sequences: 237096
Number of extensions: 938111
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)